Locus 2470

Sequence ID 2L_DroMel_CAF1
Location 6,787,919 – 6,788,012
Length 93
Max. P 0.987310
window3961

overview

Window 1

Location 6,787,919 – 6,788,012
Length 93
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 92.52
Mean single sequence MFE -27.06
Consensus MFE -23.70
Energy contribution -23.82
Covariance contribution 0.12
Combinations/Pair 1.12
Mean z-score -1.88
Structure conservation index 0.88
SVM decision value 2.07
SVM RNA-class probability 0.987310
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6787919 93 - 22407834
AAGUUUUCCCGAUUUCCGCGUGGAAAUUUCCGAAGCACAGAGCGCC--------CAAAAAACUGAUCCACCCGUUUGGGGAGAGCGUGGAAAAGCAAAACA
..(((((.(...((((((((((((....)))...((.....)).((--------(...((((.(......).)))).)))...))))))))).).))))). ( -23.80)
>DroSec_CAF1 54739 93 - 1
AAGCUUUCCCGCUUUCCGCGUGGAAAUUUCCGAAGCCCAGAGCACC--------CAAAAAACUGAUCCAACCGUUUGGGGAGAGCGUUGAAAAGCAAAACA
..(((((((((((((..((.((((....))))..))..)))))...--------....((((.(......).)))).))))))))(((....)))...... ( -27.50)
>DroSim_CAF1 56587 93 - 1
AAGUUUUCCCGCUUUCCGCGUGGAAAUUUCCGAAGCCCAGAGCACC--------CAAAAAACUGAUCCAACCGUUUGGGGAGAGCGUGGAAAAGCAAAACA
...((((((((((((((((.(((.............)))..))..(--------((((....((...))....))))))))))))).))))))........ ( -27.52)
>DroEre_CAF1 57406 93 - 1
AAGUUUUCCCGCUUUCCGCGUGGAAAUUUCCGAAGCCCUGAGCACC--------AAAAAAACUGAUCCAACCGUUUGGGGAGAGCGUGGAAAAGCAAAACA
..(((((...((((((((((((((....)))....(((..(((...--------..................)))..)))...)))))).)))))))))). ( -27.80)
>DroYak_CAF1 57806 101 - 1
AAGUUUUCCCGCUUUCUGCGUGGAAAUUUUCGAAGCCCAGAGCACCGAAGCACCCAAAAAACUGAUCCAACCGUUUGGGGAGAGCGUGGAAAAGCAAAACA
...((((((((((((((((((....)).((((..((.....))..)))))))((((((....((...))....))))))))))))).))))))........ ( -28.70)
>consensus
AAGUUUUCCCGCUUUCCGCGUGGAAAUUUCCGAAGCCCAGAGCACC________CAAAAAACUGAUCCAACCGUUUGGGGAGAGCGUGGAAAAGCAAAACA
..(((((((((((((((((.((((....))))..))..............................((((....)))))))))))).)).)))))...... (-23.70 = -23.82 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:41 2006