Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 723,718 – 723,831 |
Length | 113 |
Max. P | 0.845991 |
Location | 723,718 – 723,831 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 80.15 |
Mean single sequence MFE | -29.92 |
Consensus MFE | -18.36 |
Energy contribution | -18.20 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.21 |
Mean z-score | -2.15 |
Structure conservation index | 0.61 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.845991 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 723718 113 - 22407834 CCAACGUCCAGUGUCCAGCGUCCAGUGUCCCUGGCUGCUGGAUCAGAAUUUAUGCAUAUGACCUUAGUUAUUGACAUAAUUUCGUGGCUGGCGGAUUGGGCACGAAACGAAAA (((.((.(((((((((((((.((((.....)))).))))))))..(((.(((((((.(((((....))))))).))))).)))...)))))))...))).............. ( -39.30) >DroPse_CAF1 128056 87 - 1 -------------------------UGCUCCU-UCUCUUGGCUCAGAAUUUAUGCAUAUGACCUUAGUUAUUGACAUAAUUUCGUGGCUGGCGGGUCGAGCACGAAACGAAAA -------------------------(((((..-(((.(..(((..(((.(((((((.(((((....))))))).))))).)))..)))..).)))..)))))........... ( -25.40) >DroSec_CAF1 102343 92 - 1 C---------------------CAGUGUUCCUGACUGCUGGUUCAGAAUUUAUGCAUAUGACCUUAGUUAUUGACAUAAUUUCGUGGCUGGCGGAUUGGGCACGAAACGAAAA .---------------------..(((..((..(((((..(((..(((.(((((((.(((((....))))))).))))).)))..)))..)))).)..))))).......... ( -28.30) >DroSim_CAF1 107517 99 - 1 C--------------CAGCGUCCAGUGUCCCUGGCUGCUGGUUCAGAAUUUAUGCAUAUGACCUUAGUUAUUGACAUAAUUUCGUGGCUGGCGGAUUGGGCACGAAACGAAAA .--------------...(((...(((.(((...((((..(((..(((.(((((((.(((((....))))))).))))).)))..)))..))))...))))))...))).... ( -34.30) >DroAna_CAF1 66719 89 - 1 ------------------CG------GCUCCCGUCUCUGGGCUCCAAAUUUAUGCAUAUGACCUUAGUUAUUGACAUAAUUUCGUGGCUGGCAGCCCGGGAACGAAACGAAAA ------------------..------.....(((..((((((((((((.(((((((.(((((....))))))).))))).))......))).)))))))..)))......... ( -26.20) >DroPer_CAF1 129822 87 - 1 -------------------------UGCUCCU-UCUCGUGGCUCAGAAUUUAUGCAUAUGACCUUAGUUAUUGACAUAAUUUCGUGGCUGGCGGGUCGAGCACGAAACGAAAA -------------------------(((((..-.(((((((((..(((.(((((((.(((((....))))))).))))).)))..)))).)))))..)))))........... ( -26.00) >consensus _________________________UGCUCCUGUCUCCUGGCUCAGAAUUUAUGCAUAUGACCUUAGUUAUUGACAUAAUUUCGUGGCUGGCGGAUCGGGCACGAAACGAAAA .........................(((((....((.((((((..(((.(((((((.(((((....))))))).))))).)))..)))))).))...)))))........... (-18.36 = -18.20 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:09 2006