| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 6,786,926 – 6,787,022 |
| Length | 96 |
| Max. P | 0.508665 |
| Location | 6,786,926 – 6,787,022 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 79.39 |
| Mean single sequence MFE | -23.36 |
| Consensus MFE | -10.00 |
| Energy contribution | -10.64 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.33 |
| Structure conservation index | 0.43 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.508665 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6786926 96 + 22407834 CACACAGGCUCACCACGCGCCUCGCUCUUUCUCUCU----CGUUCUCUCUAUCUCUUGCGUUCUCG--CAACAAAAGCUUCAAGAUAAGAGUGAUUGAGCAC- .....((((.(.....).)))).((((..((.((((----..((...........(((((....))--)))............))..)))).))..))))..- ( -24.50) >DroSec_CAF1 53756 96 + 1 CACACAGGCUCAACACGCGCCUCGCUCUUUCUCUCU----CGUUCUCUCUAUCUCUUGUGUUCUCG--CAACUAAAGCUUCAAGAUAAGAGUGAUGGAGCAC- .....((((.(.....).)))).(((((.((.((((----..((...........(((((....))--)))............))..)))).)).)))))..- ( -23.10) >DroSim_CAF1 55597 96 + 1 CACACAGGCUCACCACGCGCCUCGCUCUUUCUCUCU----CGUUCUCUCUAUCUCUUGCGUUCUCG--CAACAAAAGCUUCAAGAUAAGAGUGAUGGAGCAC- .....((((.(.....).)))).(((((.((.((((----..((...........(((((....))--)))............))..)))).)).)))))..- ( -25.00) >DroEre_CAF1 56428 96 + 1 CACACAGGCACACUUCGCGCCUCGCUCUUUCUCUCU----CAUUCUCUCUAUCUCGUGCGUUCUCG--CGACAAAAGCUUCAAGAUAAGAGUGAUGUAGCAC- .....((((.(.....).)))).(((...((.((((----...(((..........((((....))--))............)))..)))).))...)))..- ( -19.05) >DroYak_CAF1 56847 85 + 1 CACACAGACACACCACGCGCCUCACUCUUUCUCUCU----CAUUC----------CUGCGUUCUCG--CAACAA-AGCUUCAAGAUAAGAGUGAUGGAGCAC- ................((.(((((((((((((....----.....----------.((((....))--))....-.......))).)))))))).)).))..- ( -21.50) >DroAna_CAF1 54070 98 + 1 CACAC-----UACCAUGCGACUCGCUCCCGCUCCCAGUGGGGCUUUUCCUUUCUCGCACACCCUCGUCCAACAAAAGCUCCAAGAUAAGAGUGCGGUUGCACC .....-----.....((((((.(((....((((....((((((((((.......((........))......))))))))))......))))))))))))).. ( -27.02) >consensus CACACAGGCUCACCACGCGCCUCGCUCUUUCUCUCU____CGUUCUCUCUAUCUCUUGCGUUCUCG__CAACAAAAGCUUCAAGAUAAGAGUGAUGGAGCAC_ ................((.(((((((((((((..................................................))).)))))))).)).))... (-10.00 = -10.64 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:40 2006