Locus 2468

Sequence ID 2L_DroMel_CAF1
Location 6,770,434 – 6,770,537
Length 103
Max. P 0.716649
window3959

overview

Window 9

Location 6,770,434 – 6,770,537
Length 103
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 80.07
Mean single sequence MFE -45.67
Consensus MFE -24.45
Energy contribution -25.40
Covariance contribution 0.95
Combinations/Pair 1.25
Mean z-score -2.19
Structure conservation index 0.54
SVM decision value 0.39
SVM RNA-class probability 0.716649
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6770434 103 - 22407834
UCAGAUGGAGGCAAAUGACCGCAUUGGGCCCAAACCGCCACCCACGCCACCAAACGGUGUGGCU---------GGUGGUCUUCCCAAGGCGCCUGCUCUGCCGCCCAAGGCG
.((((.(.((((........((.(((((.....(((((((.(((((((.......))))))).)---------))))))...))))).)))))).))))).((((...)))) ( -46.20)
>DroPse_CAF1 42181 112 - 1
UCAGAUGGAAGCAAAUGAUCGCAUUGGCCCCAAGCCACCGCCCCUGCCCCCAAAUGGGGUGGCCAGCAACGGCGGCAGUCUGCCCAAGGCCCCAGCCCUGCCGCCCAAAGUG
(((..((....))..)))..((..((((.....))))(((((((...........)))))))...))...((((((((.........(((....)))))))))))....... ( -41.40)
>DroSec_CAF1 37133 103 - 1
UCAGAUGGAGGCAAAUGACCGCAUUGGGCCCAAACCGCCACCCACGCCACCAAACGGUGUGGCU---------GGCGGUCUUCCCAAGGCGCCUGCUCUGCCGCCCAAGGCG
.((((.(.((((........((.(((((.....(((((((.(((((((.......))))))).)---------))))))...))))).)))))).))))).((((...)))) ( -48.10)
>DroYak_CAF1 39572 103 - 1
UCAGACGGAGGCGAAUGACCGCAUCGGGCCCAAACCACCGCCCACUCCACCAAACGGGGUGGCU---------GGCGGUCUGCCCAAGGCGCCCGCCCUGCCGCCCAAGGCG
......(((((((......)))...((((..........)))).))))........(((((((.---------(((((..((((...)))).)))))..)))))))...... ( -46.70)
>DroAna_CAF1 36979 103 - 1
UUAGAAUGAGGCAAAUGAUCGCAUUGGACCUAAGCCACCGCCCACGCCGCCAAAUGGUGUGGCC---------GGGGGGCCGCCUAAGGCCCCGGCAUUGCCUCCCAAAGCG
.......((((((((((....))))........(((.(((.((((((((.....)))))))).)---------))((((((......)))))))))..))))))........ ( -49.20)
>DroPer_CAF1 41904 112 - 1
UCAGAUGGAAGCAAAUGAUCGCAUUGGCCCCAAGCCACCGCCCCUGCCCCCAAAUGGGGUGGCCAGCAAUGGCGGCAGUCUGCCCAAGGCCCCAGCCCUGCCGCCGAAAGUG
(((..((....))..)))((((..((((.....))))(((((((...........)))))))...))...((((((((.........(((....)))))))))))))..... ( -42.40)
>consensus
UCAGAUGGAGGCAAAUGACCGCAUUGGGCCCAAACCACCGCCCACGCCACCAAACGGGGUGGCC_________GGCGGUCUGCCCAAGGCCCCAGCCCUGCCGCCCAAAGCG
......((.((((...((((((...((.......)).....(((((((.......)))))))............)))))).......(((....))).)))).))....... (-24.45 = -25.40 +   0.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:39 2006