Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,757,673 – 6,757,784 |
Length | 111 |
Max. P | 0.887312 |
Location | 6,757,673 – 6,757,784 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 69.76 |
Mean single sequence MFE | -26.42 |
Consensus MFE | -9.92 |
Energy contribution | -10.32 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.43 |
Mean z-score | -2.07 |
Structure conservation index | 0.38 |
SVM decision value | 0.95 |
SVM RNA-class probability | 0.887312 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6757673 111 - 22407834 UAUUCAUCUCCUUGGCCGCUUGUGAUAUUGCCAAAAAGGCAAAUGCGAGCCAUAAAUUAAGUCCCGAGACGA--AAAGCAA-AGGCACAAGCACAACAACCAGAUGAGCGAAA-A ..(((((((..(((...(((((((...((((......(((........))).........(((....)))..--...))))-...)))))))....)))..))))))).....-. ( -30.30) >DroSim_CAF1 25175 93 - 1 UAUUCCUCCCCUUGGCCGCUUGUGAUAUUGCCAAAAAGGCAAAUGCGAGCCAUAAAUUAAGUCCCGAGACGA--AAAGCGA-AG------------------CAUGAGCGAAA-A ..((((((..(((.((.(((((((...(((((.....))))).)))))))..........(((....)))..--...)).)-))------------------...))).))).-. ( -24.30) >DroEre_CAF1 27956 101 - 1 UAUUCGUCCCCUUGACUGCUGGCCAUAUUGCCAAAAAGGCAAAUGCGACCCAUAAAUUAUGUCCCGAGACGA--GAAGAAA-AGGCA---------CAGCCACAUGAGCGAAA-- ..((((..(...((...(((((((...(((((.....))))).................((((....)))).--.......-.))).---------))))..)).)..)))).-- ( -24.70) >DroWil_CAF1 34418 114 - 1 AGUUCGUCAUCUUGGCUGCUUUCGAUAUUGCCAAAAUGGCAAAUGCGGGUCAUAAAUUAUGCCCCAUGCCGCGACAAUCGGCCAGAACAAGAAAAUCAGCCAUACGAGCAGAG-A .((((((.....((((((.((((....(((((.....)))))(((.(((.((((...))))))))))((((.......))))........))))..)))))).))))))....-. ( -37.10) >DroYak_CAF1 26730 112 - 1 UAUUCCUCCCCUUGACCGCUUGCCAUAUUGCCAAAAAGGCAAAUGCGACCCAUAAAUUAUGUCCCGAGACGA--AAAGAAG-GGGCAGAAGCACAACAACCACAUGAGCGAAAAA ..(((..((((((...((((((((.............)))))..)))............((((....)))).--....)))-)))..)))((.((.........)).))...... ( -22.92) >DroAna_CAF1 26011 91 - 1 CACGCUUCUUCUUGACCAUUGGCUAUAUUGCCAAAAAGGCAAAUGCGACCCAUAAAUUAUGUCCCGAAGCAA--CAA----------------CAACAGCCCCACAGGC------ ...(((((...(((.((.(((((......)))))...)))))..(.(((...........))).))))))..--...----------------.....(((.....)))------ ( -19.20) >consensus UAUUCCUCCCCUUGACCGCUUGCGAUAUUGCCAAAAAGGCAAAUGCGACCCAUAAAUUAUGUCCCGAGACGA__AAAGCAA_AGGCA______CAACAGCCACAUGAGCGAAA_A ................((((((.....(((((.....)))))..................(((....)))..................................))))))..... ( -9.92 = -10.32 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:33 2006