Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,755,394 – 6,755,508 |
Length | 114 |
Max. P | 0.550450 |
Location | 6,755,394 – 6,755,508 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 87.59 |
Mean single sequence MFE | -23.35 |
Consensus MFE | -15.70 |
Energy contribution | -15.32 |
Covariance contribution | -0.37 |
Combinations/Pair | 1.09 |
Mean z-score | -1.66 |
Structure conservation index | 0.67 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.550450 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6755394 114 + 22407834 CAAAAAAAAAAAAAAAACAAUGAAAUCGCUGUGUAAAUAAGACGAUAUCGCCCAAUUAGAAAGCGGAACAGG--GAUGUAUAUCAUCAUCCUGAACGGAAACGGUUUGAAUUUGUG ................((((......((((.(.(((....(.((....)))....))).).))))((((.((--((((........))))))...((....))))))....)))). ( -20.60) >DroSim_CAF1 22868 104 + 1 CAAA----------AAACAAUGAAAUCGCUGUGUAAAUAAGACGAUAUCGCCCAAUUAGAAAGCGGAACCGG--GAUGUAUAUCAUCAUCCUGAACGGAAACGGUUUGAAUUUGUG ....----------..((((......((((.(.(((....(.((....)))....))).).))))(((((((--((((........))))))....(....))))))....)))). ( -22.00) >DroEre_CAF1 25667 107 + 1 CA-------AAAAAAAACUAUGAAAUUGCUGUGUAAAUAAGACGAUAUCGGCCAAUUAGAGAGCGGAACAGG--GAUGUAUAUCAUCGUCCUAAACGGAAACGGUUUGAAUUUGUG ((-------((...((((.......(((((.(.(((......((....)).....))).).)))))....((--((((........))))))...((....))))))...)))).. ( -20.60) >DroYak_CAF1 24330 114 + 1 CAUACAAAGAAAAAAAAC--UGAAAUCGCUGUGUAAAUAAGACGAUAUCGCCCAAUUAGGGAGCGGAACAGGAUGAUGUAUAUCAUCAUCCAAAACGGAAACGGUUUGAAUUUGUG ..((((((......((((--((...(((((............((....))(((.....))))))))....((((((((.....))))))))..........))))))...)))))) ( -30.20) >consensus CAAA_____AAAAAAAACAAUGAAAUCGCUGUGUAAAUAAGACGAUAUCGCCCAAUUAGAAAGCGGAACAGG__GAUGUAUAUCAUCAUCCUAAACGGAAACGGUUUGAAUUUGUG ..........................((((.(.(((......((....)).....))).).))))((((.((..((((.....))))..))....((....))))))......... (-15.70 = -15.32 + -0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:32 2006