Locus 2462

Sequence ID 2L_DroMel_CAF1
Location 6,744,547 – 6,744,639
Length 92
Max. P 0.994543
window3950

overview

Window 0

Location 6,744,547 – 6,744,639
Length 92
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 67.07
Mean single sequence MFE -24.03
Consensus MFE -8.54
Energy contribution -11.02
Covariance contribution 2.47
Combinations/Pair 1.22
Mean z-score -2.80
Structure conservation index 0.36
SVM decision value 2.49
SVM RNA-class probability 0.994543
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6744547 92 + 22407834
AGGGCUUCU--GUUCAUUGGGAGCAGAGCCCCACAAAUGUUAAUGGGACACUCAUUAUUAUUGAUUAGUUGUUUAGUUGAUGGACAGCUAUCAC
.(((((.((--((((.....)))))))))))....((((.(((((((...))))))).))))(((.(((((((((.....)))))))))))).. ( -32.80)
>DroSec_CAF1 11514 76 + 1
AGGGCUUCU--GUUUAUUGGGAGCAGAGCCCCACUAAUGUUAAUGGGACGCUCAUUAAUAUUGAUUAGUUAUUU----------------UAAG
.(((((.((--((((.....)))))))))))...(((((((((((((...)))))))))))))...........----------------.... ( -25.30)
>DroSim_CAF1 12011 76 + 1
AGGGCUUCU--GUUUAUUGGGAGCAGAGCCCCACAAAUGUUAAUGGGACGCUCAUUAAUAUUGAUUAGUUGUUU----------------UAGG
.(((((.((--((((.....)))))))))))....((((((((((((...))))))))))))............----------------.... ( -24.40)
>DroEre_CAF1 14899 85 + 1
GGGGCUUCU--CUUUAUUGGGAACAGAGCCCCACAAAUGUUAAUGGGAUGUUCAUUAAUAUUGAUUAGUUGUAUA-------GGCAGCCAUCAC
(((((((((--(......))))....))))))...(((((((((((.....)))))))))))(((..(((((...-------.))))).))).. ( -26.80)
>DroYak_CAF1 13246 82 + 1
AGGGCUUCU--GUUUAUUGGGAGCAGAGCCACACAAAAGUUAAUGGG---UUCAAUUAUAUUGAUUAGUUGUAUA-------GGCAGCCAUCAC
..(((((((--((((.....)))))))(((..((((.((((((((..---........))))))))..))))...-------)))))))..... ( -21.70)
>DroPer_CAF1 14894 74 + 1
AUGGCUUCUCUGUGCUUUAGAGACAGGAAAAUAAAAAUAUCU-------AUUAAUUAUCAUUGAUUAGCCACU-AGAUGCUG------------
.((((.((((((.....))))))...................-------..((((((....))))))))))..-........------------ ( -13.20)
>consensus
AGGGCUUCU__GUUUAUUGGGAGCAGAGCCCCACAAAUGUUAAUGGGACGCUCAUUAAUAUUGAUUAGUUGUUUA_______________UCAC
.(((((.((..((((.....)))))))))))....((((((((((((...))))))))))))................................ ( -8.54 = -11.02 +   2.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:31 2006