Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,741,147 – 6,741,238 |
Length | 91 |
Max. P | 0.620671 |
Location | 6,741,147 – 6,741,238 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 80.26 |
Mean single sequence MFE | -18.02 |
Consensus MFE | -10.77 |
Energy contribution | -10.88 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.22 |
Mean z-score | -1.75 |
Structure conservation index | 0.60 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.620671 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6741147 91 - 22407834 CCUCGAU--CU--CCCAUUGUGGUGGCAGUUAACUUGAUUAUUUUACAAAUAAUUGAAAAGUUUCCCUUUUCCUCGCCAUUGCGAAAAUUGCACA .......--..--....(((..(((((.........(((((((.....)))))))((((((.....))))))...)))))..))).......... ( -19.90) >DroGri_CAF1 10037 88 - 1 CCC-CAU--CGACUCCUUUGCGGUAACAGUUAACUUGAUUAUUUUACAAAUAAUUGAAAAGGCUGCCA----AGCGCCAUUGUACAAAUUGCACA ...-...--.........((((((.(((((....(..((((((.....))))))..)...(((.((..----.))))))))))....)))))).. ( -14.10) >DroSim_CAF1 8485 91 - 1 CCCCGAU--CU--CCCAUUGUGGUGGCAGUUAACUUGAUUAUUUUACAAAUAAUUGAAAAGUUUCCCUUUUACUCGCCAUUGCGAAAAUUGCACA .......--..--....(((..((((((((.((((((((((((.....)))))))...)))))........))).)))))..))).......... ( -17.80) >DroYak_CAF1 8170 91 - 1 CCCCGAU--CU--CCCAUUGUGGUGGCAGUUAACUUGAUUAUUUUACAAAUAAUUGAAAAGUUUCCCUUUUCCUCGCCAUUGCGAAAAUUGCACA .......--..--....(((..(((((.........(((((((.....)))))))((((((.....))))))...)))))..))).......... ( -19.90) >DroMoj_CAF1 10041 77 - 1 CCC-CAU--UUA----CUUGCGGUAACAGUUAACUUGAUUAUUUUGCAAAUAAUUGAAAAGGCUG-----------UCAUUGUACAAAUUGCAAA ...-...--...----..((((((.((((((...(..((((((.....))))))..)...)))))-----------).))))))........... ( -14.20) >DroAna_CAF1 8809 92 - 1 GCCCCCUCGCU--CUCAUUGUGGUGGCAGUUAACUUGAUUAUUUUCCAAAUAAUUGAAAAGUUUC-CUUUUCCUCGCCAUUGCGAAAAUUGCACA ........((.--....(((..(((((.........(((((((.....)))))))((((((....-))))))...)))))..))).....))... ( -22.20) >consensus CCCCCAU__CU__CCCAUUGUGGUGGCAGUUAACUUGAUUAUUUUACAAAUAAUUGAAAAGUUUCCCUUUUCCUCGCCAUUGCGAAAAUUGCACA .................((((((((((.(....)(..((((((.....))))))..)..................)))))))))).......... (-10.77 = -10.88 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:30 2006