Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,737,973 – 6,738,072 |
Length | 99 |
Max. P | 0.524594 |
Location | 6,737,973 – 6,738,072 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 80.94 |
Mean single sequence MFE | -25.20 |
Consensus MFE | -16.95 |
Energy contribution | -17.15 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.16 |
Mean z-score | -1.31 |
Structure conservation index | 0.67 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.524594 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6737973 99 - 22407834 CACUCCAAGUAGCGCAUCAUAAUCU---CCUUUACUAAAUCCAUAGCCUUUGGUGGUGUGGUUCUACCGGGAGAGCUACCUGCGAUUCAGUUCACAGGAGUA .(((((..(((((.........(((---(((.........(((((.((......))))))).......))))))))))).((.((......)).))))))). ( -27.89) >DroSec_CAF1 4786 99 - 1 CACUCCAAGUAGCCCAUCAUAGUCC---CCUUUACCCAAUCCAUAGCCUCUAGUCGUAUGGUUCUACCGGGAGAGCUAUCUGCGAUUCAGUUCACAGGAGUA .(((((..((((......(((((((---((..........(((((((.....))..))))).......))).)).))))))))((......))...))))). ( -19.93) >DroSim_CAF1 5258 99 - 1 UACUUCAAGUAGCCCAUAAUAAUCC---CCUUUACUCAAUCCAUAGCCUCUAGUCGUAUGGUUCUACCGGGAGAGCUAUCUGCGAUUCAGUUCACAGGAGUA .........................---....(((((.....(((((((((....(((......)))..)))).)))))(((.((......)).)))))))) ( -18.60) >DroEre_CAF1 7384 99 - 1 CACUCCAAGUAGCACAUCAUAAUAC---UCCUUACUCAAUCCACAGCCCCUGGUGGUGUGGUUCUACCGGGAGAGCUACCUGCGAUUCAGUUCGCAGGAGUA .(((((..(((((..((....)).(---((((........(((((.((....).).))))).......))))).))))).(((((......)))))))))). ( -33.26) >DroYak_CAF1 4936 98 - 1 CACUUCAUAU----CAUCAUAAUCCUCCUCCUUACUCAAUUCAUAGCCCCUGGUGGUGUGGUUCUACCGGGAGAGCUACCUGCGAUUCAGUUCGCAGGAGUA ..........----..................(((((......(((((((((((((.......)))))))).).)))).((((((......))))))))))) ( -31.60) >DroAna_CAF1 5009 97 - 1 UA-UCCAAAAAGA-AACCUUAAUGCUUAU-CUUACU--UUCCACAGCCCUUGGUAGUUUGGUUCUAUAGGGAGAGCUAUCUGCGCUUUAGCUCCCAGGAGUA ..-(((.......-..(((((......((-(..(((--..(((.......))).)))..)))....))))).((((((.........))))))...)))... ( -19.90) >consensus CACUCCAAGUAGC_CAUCAUAAUCC___CCCUUACUCAAUCCAUAGCCCCUGGUGGUGUGGUUCUACCGGGAGAGCUACCUGCGAUUCAGUUCACAGGAGUA .(((((..............................................((((.((((((((......))))))))))))((......))...))))). (-16.95 = -17.15 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:28 2006