Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,727,180 – 6,727,292 |
Length | 112 |
Max. P | 0.817681 |
Location | 6,727,180 – 6,727,292 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 93.27 |
Mean single sequence MFE | -39.92 |
Consensus MFE | -37.41 |
Energy contribution | -37.47 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.10 |
Mean z-score | -1.14 |
Structure conservation index | 0.94 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.817681 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6727180 112 - 22407834 CUGCUCUUCCAUGUCGGGCUGCAGCUUGGCGUGCUGGGCGAGCUUCUGUUCGGAGAGCUCCAGCUUCUCCUCGAUGGCCCCGAUCUUCUCCUCGUGCAGCUGAUUCGGAUUC .......(((..(((((.(((((.(..((.(..(.((((((((....))))(((((((....)).)))))......)))).).....).))..)))))))))))..)))... ( -40.50) >DroSec_CAF1 39808 112 - 1 CUGCUCCUCCAUGUCGGGCUGCAGCUUGGCGUGCUGGGCGAGCUUUUGUUCGGAGAGCUCCAGCUUCUCCUCGAUGGCCCCGAUCUUCUCCUCGUGCAGCUGAUACGGAUUC .......(((.((((((.(((((.(..((.(..(.((((((((....))))(((((((....)).)))))......)))).).....).))..)))))))))))).)))... ( -41.80) >DroSim_CAF1 39997 112 - 1 CUGCUCCUCCAUGUCGGGCUGCAGCUUGGCGUGCUGGGCGAGCUUUUGUUCGGAGAGCUCCAGCUUCUCCUCGAUGGCCCCGAUCUUCUCCUCGUGCAGCUGAUACGGAUUC .......(((.((((((.(((((.(..((.(..(.((((((((....))))(((((((....)).)))))......)))).).....).))..)))))))))))).)))... ( -41.80) >DroEre_CAF1 46415 112 - 1 CUGCUCCUCCAUGUCAGGCUGCAGCUUGGCGUGCUGGGCGAGCUUCUGUUCGGAGAGCUCCAGCUUCUCCUCGAUGGCCCCGAUCUUCUCCUCGUGCAGCUGAUUCGGGUUC ..((.((..((((((((((....))))))))))..))))((((....))))(((((((....)).))))).....(((((.((((..((.(....).))..)))).))))). ( -44.40) >DroYak_CAF1 41776 112 - 1 CUGCUCCUCCAUGUCAGGCUGCAGCUUGGCGUGCUGGGCGAGCUUCUGUUCGGAGAGCUCCAGCUUCUCCUCGAUGGCCCCGAUCUUCUCCUCGUGCAGCUGAUUCGAAUUC ..((.((..((((((((((....))))))))))..))))((((....))))(((((((....)).)))))((((.(((.((((........))).)..)))...)))).... ( -40.70) >DroAna_CAF1 45828 103 - 1 CUGCUCCUCCAUGUCCGGCUGAAGUUUGGCGUGCUGGGCAAGCUUCUGCUCGGAUAGCUCCAGCUUCUCCUCGAUGGCCCCGAUCUUCUCCUCAUGCAGCUGA--------- ((((....(((((((((((.((((((((.(......).)))))))).)).)))))(((....)))........))))....((........))..))))....--------- ( -30.30) >consensus CUGCUCCUCCAUGUCGGGCUGCAGCUUGGCGUGCUGGGCGAGCUUCUGUUCGGAGAGCUCCAGCUUCUCCUCGAUGGCCCCGAUCUUCUCCUCGUGCAGCUGAUUCGGAUUC ((((.....((((((((((....))))))))))(.((((((((....))))(((((((....)).)))))......)))).).............))))............. (-37.41 = -37.47 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:26 2006