Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,723,313 – 6,723,492 |
Length | 179 |
Max. P | 0.961872 |
Location | 6,723,313 – 6,723,413 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 83.02 |
Mean single sequence MFE | -25.26 |
Consensus MFE | -16.06 |
Energy contribution | -16.50 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.18 |
Mean z-score | -2.78 |
Structure conservation index | 0.64 |
SVM decision value | 1.53 |
SVM RNA-class probability | 0.961872 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6723313 100 + 22407834 AACCAAAAUCGAUGUUUGUAUGGUGCUAUCGAUGUUUUUACUGGCUCAACACCAUCGAUGAUUUAUUUAUUAGCUUCCAAGCAUCGAUAACACAUGAGCU .......(((((((((((.((((((.....((.(((......)))))..)))))).(((((.....)))))......)))))))))))............ ( -21.10) >DroSec_CAF1 35961 96 + 1 AACCAAAAUCGAUGUUUGUAUGGUGAUAUCGAUGUUUCUACUGGCUCAGCACCAUCGAUGAUUUAUUU----GCUUCCAAGCAUCGAUACCUCAUGGGCU .......(((((((((((...((..(((((((((...((........))...))))))))......).----.))..))))))))))).((....))... ( -25.20) >DroSim_CAF1 36137 96 + 1 AACCAAAAUCGAUCGUUGUAUGGUGCUAUCGAUGUUUCUACUGGCUCAGCACCAUCGAUGAUUUAUUU----GCUUCCAACCAUCGAUACCUCAUGGGCU .....((((.((((((((.((((((((...((.(((......))))))))))))))))))))).))))----........((((.((....))))))... ( -26.00) >DroEre_CAF1 42327 88 + 1 AACAAAAAUCGAUGUUUGUAUGAUGUUAUCGAUGUUUAUACUGGUUCAGACACAUCGAUGAUUUACAU----G----U----AUCGAUAACUCACGAGUU .......(((((((..((((....(((((((((((.....(((...)))..))))))))))).)))).----.----)----))))))((((....)))) ( -24.10) >DroYak_CAF1 37677 92 + 1 AACAAAAAUCGAUGUUUGUAUGAUGAUAUCGAUGUUUCUACUGGCUCAGCGACAUCGAUGAUUUACUU----G----CAAACAUCGAUAACUCAUGGAUU .......(((((((((((((....((((((((((((.((........)).))))))))).)))....)----)----)))))))))))............ ( -29.90) >consensus AACCAAAAUCGAUGUUUGUAUGGUGAUAUCGAUGUUUCUACUGGCUCAGCACCAUCGAUGAUUUAUUU____GCUUCCAAGCAUCGAUAACUCAUGGGCU .......(((((((((........))))))))).........((((((.....(((((((.....................)))))))......)))))) (-16.06 = -16.50 + 0.44)
Location | 6,723,336 – 6,723,453 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 77.65 |
Mean single sequence MFE | -27.92 |
Consensus MFE | -15.62 |
Energy contribution | -16.62 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.17 |
Mean z-score | -2.25 |
Structure conservation index | 0.56 |
SVM decision value | 1.43 |
SVM RNA-class probability | 0.952881 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6723336 117 - 22407834 AGCGAUUAAAUUAUUCGAUAAGAAUCAUUGCUCUUAUACGAGCUCAUGUGUUAUCGAUGCUUGGAAGCUAAUAAAUAAAUCAUCGAUGGUGUUGAGCCAGUAAAAACAUCGAUAGCA .((((((.......(((((((.(......((((......)))).....).))))))).(((....))).........))))(((((((...(((......)))...))))))).)). ( -27.70) >DroSec_CAF1 35984 113 - 1 AACGAUUAAAUUAUUCGAUAAGAAUCGUUGCUCUUAUACGAGCCCAUGAGGUAUCGAUGCUUGGAAGC----AAAUAAAUCAUCGAUGGUGCUGAGCCAGUAGAAACAUCGAUAUCA ...((((.......((((((....((((.((((......))))..))))..))))))((((....)))----)....))))(((((((.(((((...)))))....))))))).... ( -30.10) >DroSim_CAF1 36160 113 - 1 AACGAUUAAAUGAUUCGAUAAGAAUCGUUGCUCUUAUACGAGCCCAUGAGGUAUCGAUGGUUGGAAGC----AAAUAAAUCAUCGAUGGUGCUGAGCCAGUAGAAACAUCGAUAGCA ........((((((((.....))))))))((((......))))......(.((((((((.(((....)----))........((..((((.....))))...))..)))))))).). ( -31.30) >DroEre_CAF1 42350 94 - 1 ----------UUGUUCGAUAA-AUUCAUUGGUAUUAUGGGAACUCGUGAGUUAUCGAU----A----C----AUGUAAAUCAUCGAUGUGUCUGAACCAGUAUAAACAUCGAUAACA ----------.((((((((((-.(((((.(((.........))).)))))))))))).----)----)----)........((((((((..(((...))).....)))))))).... ( -23.10) >DroYak_CAF1 37700 108 - 1 AGCGAUUAAAUUAUUCGAUUA-AUUAAUUGGCACUAUGGGAAUCCAUGAGUUAUCGAUGUUUG----C----AAGUAAAUCAUCGAUGUCGCUGAGCCAGUAGAAACAUCGAUAUCA ..............(((((..-.((.((((((..(((((....)))))(((((((((((((((----.----...)))).))))))))..)))..)))))).))...)))))..... ( -27.40) >consensus AACGAUUAAAUUAUUCGAUAAGAAUCAUUGCUCUUAUACGAGCCCAUGAGUUAUCGAUGCUUGGAAGC____AAAUAAAUCAUCGAUGGUGCUGAGCCAGUAGAAACAUCGAUAGCA ..............((((((....((((.((((......))))..))))..))))))........................(((((((...(((......)))...))))))).... (-15.62 = -16.62 + 1.00)
Location | 6,723,373 – 6,723,492 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 75.92 |
Mean single sequence MFE | -22.98 |
Consensus MFE | -12.59 |
Energy contribution | -13.93 |
Covariance contribution | 1.34 |
Combinations/Pair | 1.13 |
Mean z-score | -2.50 |
Structure conservation index | 0.55 |
SVM decision value | 1.42 |
SVM RNA-class probability | 0.952165 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6723373 119 + 22407834 AUUUAUUUAUUAGCUUCCAAGCAUCGAUAACACAUGAGCUCGUAUAAGAGCAAUGAUUCUUAUCGAAUAAUUUAAUCGCUGUAAAGCGAAUUGCAAAUUAAUUAAGAUAAAUAAAUACU (((((((((((.(((....))).(((((((..(((..((((......)))).)))....))))))).........(((((....)))))................)))))))))))... ( -28.80) >DroSim_CAF1 36197 115 + 1 AUUUAUUU----GCUUCCAACCAUCGAUACCUCAUGGGCUCGUAUAAGAGCAACGAUUCUUAUCGAAUCAUUUAAUCGUUUUAAAGCGAAUUGCAAAUUAAUUCAGAUAAAUUUAUAAU ((((((((----((((........((((.((....))((((......))))...(((((.....))))).....)))).....))))((((((.....))))))))))))))....... ( -23.32) >DroYak_CAF1 37737 110 + 1 AUUUACUU----G----CAAACAUCGAUAACUCAUGGAUUCCCAUAGUGCCAAUUAAU-UAAUCGAAUAAUUUAAUCGCUCUAAGGCGAAUUGCGUAUUAAUAUAUUUAAAUAUACUAU ........----(----(((...(((((.(((.((((....)))))))..........-..))))).........(((((....))))).))))((((...((....))...))))... ( -16.82) >consensus AUUUAUUU____GCUUCCAAACAUCGAUAACUCAUGGGCUCGUAUAAGAGCAAUGAUUCUUAUCGAAUAAUUUAAUCGCUCUAAAGCGAAUUGCAAAUUAAUUAAGAUAAAUAUAUAAU ((((((((...............((((((........((((......)))).........)))))).........(((((....)))))...............))))))))....... (-12.59 = -13.93 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:25 2006