Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,722,697 – 6,722,790 |
Length | 93 |
Max. P | 0.574102 |
Location | 6,722,697 – 6,722,790 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 83.80 |
Mean single sequence MFE | -25.15 |
Consensus MFE | -15.31 |
Energy contribution | -15.38 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.28 |
Mean z-score | -1.89 |
Structure conservation index | 0.61 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.574102 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6722697 93 - 22407834 GAUAAGAUAUAUAUAU--GUAUAUGUGUACAAAUAAAGGCACUGGAGGCUACCACGGAUACGGAAUUGAUUUGAUGGGGGCCCUGCGCCCCGCAA ......((((((((..--..)))))))).........(((.(.((.(((..((((((((.((....))))))).)))..)))))).)))...... ( -21.90) >DroSec_CAF1 35330 94 - 1 GAUAAGAUACAUAUAUAAAUAUAUAUGUACAGAUAAAUGUACUGGAGGCUACCACGGAUACGGAAUUGAUUUGAUGG-GGCCCUGCGCCCCGCAA .......(((((((((....)))))))))(((((...(((((((..(....)..))).))))......)))))..((-(((.....))))).... ( -24.90) >DroSim_CAF1 35235 94 - 1 GAUAAGAUACAUAUAUAAAUAUAUAUGUACAGAUAAAUGUACUGGAGGCUACCACGGAUACGGAAUUGAUUUGAUGG-GGCCCUGCGCCCCGCAA .......(((((((((....)))))))))(((((...(((((((..(....)..))).))))......)))))..((-(((.....))))).... ( -24.90) >DroEre_CAF1 41727 87 - 1 GAUAAGAUAUAUAUACA-GUAUAUAUAUACGUAUAUAGGCCCUGGAGGCCCCC-C----AUGGAAUUGAUUUGAUGGGGGCUCCGCACC--CCAA .........(((((((.-((((....)))))))))))((...(((((..((((-(----((.(((....))).))))))))))))....--)).. ( -28.90) >consensus GAUAAGAUACAUAUAUA_AUAUAUAUGUACAGAUAAAGGCACUGGAGGCUACCACGGAUACGGAAUUGAUUUGAUGG_GGCCCUGCGCCCCGCAA .......(((((((((....))))))))).........((...((.((((.((((((((.........))))).))).))))))))......... (-15.31 = -15.38 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:22 2006