Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,716,442 – 6,716,533 |
Length | 91 |
Max. P | 0.781425 |
Location | 6,716,442 – 6,716,533 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 67.86 |
Mean single sequence MFE | -24.65 |
Consensus MFE | -8.70 |
Energy contribution | -8.78 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.27 |
Mean z-score | -1.93 |
Structure conservation index | 0.35 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.781425 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6716442 91 - 22407834 GUAUACCUGCUACUUGAAAUUAGGGGUAUACCAAUAUCGUGAGUCGUUUUGUAACACUGACGAAGGAAGUACCUU--------------AAACUGGAAUCUUACA ((((((((.(((........))))))))))).....((((.(((.(((....)))))).)))).(.(((..((..--------------.....))...))).). ( -20.50) >DroSec_CAF1 29064 105 - 1 GUAUACCCGCUACUUGAAAUUAGGGGUAUAUCAAUACCGUGAAUCGUUUUGUAACACUGACGAAGGAAGUUCCUUAAAGGGUAUAAAUUAAAAUGGGAACUUAAA ((((((((.(((........))))))))))).....((.....(((((..........))))).))((((((((.....(((....))).....))))))))... ( -24.10) >DroSim_CAF1 28933 105 - 1 GUAUACCCGCUACUUGAAAUUAGGGGUAUAUCAAUACGGUCAGUCGUUUUGUAACACUGGCGAAGGAAGUUCCUUAUAGAUUAAAAAUUAAAAUGGGAACUUAAA ((((((((.(((........))))))))))).......((((((.(((....))))))))).....((((((((....................))))))))... ( -27.75) >DroEre_CAF1 30427 70 - 1 GUAUACCCGGUACUUAAAAUUAGGGGUGUACCAUUACCGUGGAGCAGUUUGUAACAC-----------------------------------CUGGGAUCUUAAA .....(((((..((((....))))((((......))))(((..((.....))..)))-----------------------------------)))))........ ( -16.00) >DroYak_CAF1 30663 104 - 1 GUAUACCCGGUACUUAAAAUUAG-GGUAUACCAUCAUCGUGGUGUGUUUUGCCACGCGCACGGUGGAAGCCUCCUAUCAGGUAUAUCAUAAACUGGGAUCUUAAA .....((((((.((.......))-((((((((...(((((((((((......))))).))))))(((....))).....))))))))....))))))........ ( -34.90) >consensus GUAUACCCGCUACUUGAAAUUAGGGGUAUACCAAUACCGUGAAUCGUUUUGUAACACUGACGAAGGAAGUUCCUUA_____UA_A___UAAACUGGGAUCUUAAA ((((((((.(((........))))))))))).......................................................................... ( -8.70 = -8.78 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:21 2006