Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,708,138 – 6,708,239 |
Length | 101 |
Max. P | 0.999382 |
Location | 6,708,138 – 6,708,239 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 91.70 |
Mean single sequence MFE | -32.46 |
Consensus MFE | -24.92 |
Energy contribution | -26.72 |
Covariance contribution | 1.80 |
Combinations/Pair | 1.07 |
Mean z-score | -1.77 |
Structure conservation index | 0.77 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.727602 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6708138 101 + 22407834 CUUCCAGGCACUUGAAUAUGGAAUGCACUUCGCACCUGGCCACUUGGCGCACUCAUUUUCCGAGUGAGCGGAGUGUAGCCCAGAUUUUGGCCACACGAA-UA ......(((....((((.(((..((((((((((.....(((....))).(((((.......))))).))))))))))..))).))))..))).......-.. ( -39.20) >DroSec_CAF1 20805 101 + 1 CUUCCACGCACUUGAAUAUGGAAUGCACUUCGCAACUGGCCACUUGGCGCACUGAUUUUCCGAGUGAGCGGAGUGUAGCCCAUAUUUUGGCCACACGAU-UG .......((....((((((((..((((((((((.....(((....))).(((((......).)))).))))))))))..))))))))..))........-.. ( -35.60) >DroSim_CAF1 20615 101 + 1 CUUCCACGCACUUGAAUAUGGAAUGCACUUCGCACCUGGUCACUUGGCGCACUCAUUUUCCGAGUGAGCGGAGUGUAGCCCAGAUUUUGGCCACACGAA-UG .......((....((((.(((..((((((((((.....(((....))).(((((.......))))).))))))))))..))).))))..))........-.. ( -32.40) >DroEre_CAF1 21877 99 + 1 CUUCCACGCACUUGAAUAUGGAAUGCACUUCGCACCUGGCCACUUUGCGCAUUCAUUUUCCGAGUGAGCGGA--AUAGCCCAGAUUGUGGCCACACGAU-CC .((((.(.((((((......((((((.(...((.....))......).))))))......)))))).).)))--).......(((((((....))))))-). ( -29.40) >DroYak_CAF1 21770 100 + 1 CUUCCACGCACUUGAAUACGGAAUGCACUUCGCACCUGGCCACUUUGCGCAUUCAUUUUCCGAGUGAGCGGC--GUAGCCCAGAUUUUGGCCACACGAAGCA .......(((.((.......)).))).(((((....((((((....((.(((((.......))))).))(((--...))).......))))))..))))).. ( -25.70) >consensus CUUCCACGCACUUGAAUAUGGAAUGCACUUCGCACCUGGCCACUUGGCGCACUCAUUUUCCGAGUGAGCGGAGUGUAGCCCAGAUUUUGGCCACACGAA_UA .......((....((((.(((..((((((((((.....(((....))).(((((.......))))).))))))))))..))).))))..))........... (-24.92 = -26.72 + 1.80)
Location | 6,708,138 – 6,708,239 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 91.70 |
Mean single sequence MFE | -36.76 |
Consensus MFE | -33.46 |
Energy contribution | -34.46 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.07 |
Mean z-score | -2.31 |
Structure conservation index | 0.91 |
SVM decision value | 3.56 |
SVM RNA-class probability | 0.999382 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6708138 101 - 22407834 UA-UUCGUGUGGCCAAAAUCUGGGCUACACUCCGCUCACUCGGAAAAUGAGUGCGCCAAGUGGCCAGGUGCGAAGUGCAUUCCAUAUUCAAGUGCCUGGAAG ..-...((((((((........)))))))).(((((((((((.....)))))).....)))))(((((..(((((((.....))).)))..)..)))))... ( -37.30) >DroSec_CAF1 20805 101 - 1 CA-AUCGUGUGGCCAAAAUAUGGGCUACACUCCGCUCACUCGGAAAAUCAGUGCGCCAAGUGGCCAGUUGCGAAGUGCAUUCCAUAUUCAAGUGCGUGGAAG ..-...((((((((........))))))))(((((.((((.(((.....(((((((...(..(....)..)...))))))).....))).)))).))))).. ( -38.10) >DroSim_CAF1 20615 101 - 1 CA-UUCGUGUGGCCAAAAUCUGGGCUACACUCCGCUCACUCGGAAAAUGAGUGCGCCAAGUGACCAGGUGCGAAGUGCAUUCCAUAUUCAAGUGCGUGGAAG ..-...((((((((........))))))))(((((.((((.(((....((((((((...((........))...))))))))....))).)))).))))).. ( -39.20) >DroEre_CAF1 21877 99 - 1 GG-AUCGUGUGGCCACAAUCUGGGCUAU--UCCGCUCACUCGGAAAAUGAAUGCGCAAAGUGGCCAGGUGCGAAGUGCAUUCCAUAUUCAAGUGCGUGGAAG ..-......(((((........)))))(--(((((.((((.(((....((((((((...((........))...))))))))....))).)))).)))))). ( -32.60) >DroYak_CAF1 21770 100 - 1 UGCUUCGUGUGGCCAAAAUCUGGGCUAC--GCCGCUCACUCGGAAAAUGAAUGCGCAAAGUGGCCAGGUGCGAAGUGCAUUCCGUAUUCAAGUGCGUGGAAG ..((((((((((((........))))))--))(((.((((.(((....((((((((...((........))...))))))))....))).)))).))))))) ( -36.60) >consensus CA_UUCGUGUGGCCAAAAUCUGGGCUACACUCCGCUCACUCGGAAAAUGAGUGCGCCAAGUGGCCAGGUGCGAAGUGCAUUCCAUAUUCAAGUGCGUGGAAG ......((((((((........))))))))(((((.((((.(((....((((((((...((........))...))))))))....))).)))).))))).. (-33.46 = -34.46 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:14 2006