Locus 2450

Sequence ID 2L_DroMel_CAF1
Location 6,707,753 – 6,707,867
Length 114
Max. P 0.844092
window3930

overview

Window 0

Location 6,707,753 – 6,707,867
Length 114
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 78.45
Mean single sequence MFE -26.56
Consensus MFE -13.83
Energy contribution -16.67
Covariance contribution 2.84
Combinations/Pair 1.24
Mean z-score -2.23
Structure conservation index 0.52
SVM decision value 0.76
SVM RNA-class probability 0.844092
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6707753 114 + 22407834
GCUUGAUUUAUCAUCAGAUAUAAAAUGGCGGUGAAAUGAAUAGAAAUCUUGUGAGGCGCUCAUAAAA-AAUAUUCAUAGAUUGGCCU-AUCAACAACUUGGUGAUUAUC-AUGCAAU--
((.((((..((((((((.........(((.(....(((((((......(((((((...)))))))..-..)))))))....).))).-.........)))))))).)))-).))...-- ( -28.41)
>DroPse_CAF1 34747 105 + 1
GCAUGAUUUAUCAUCAGAUAUGAAAUGGCGGUGAAAUGAGGCGCAAACU------------AUAAAAAACUAUUCAUAAUUUGGCCCAAUCAAUAAGGCAGCGAUUAUCAAUGCCAU--
(((((((..(((.(((....)))..((.(..(((..((.(((.((((.(------------((.((......)).))).))))))))).)))....).))..))).))).))))...-- ( -18.40)
>DroSec_CAF1 20480 114 + 1
GCAUGAUUUAUCAUCAGAUAUAAAAUGGCGGUGAAAUGAAUAGAAAUCUUGUGAGGCGCUCAUAAAA-AAUAUUCAUAGAUUGGCCU-AUCAACAACUUGGUGAUUAUC-AUGCAAU--
(((((((..((((((((.........(((.(....(((((((......(((((((...)))))))..-..)))))))....).))).-.........)))))))).)))-))))...-- ( -32.71)
>DroEre_CAF1 21451 114 + 1
GCAUGAUUUAUCAUCAGAUAUAAAAUGGCGGUGAAAUGAAUAGAAAUCUUGCGAGGCGAUCGUAAAA-AGUAUUCAUAAAUUGGCCU-AUCAACAAGUUGGUGAUUACC-AUGCAAU--
(((((....((((((((.........(((.(....(((((((......((((((.....))))))..-..)))))))....).))).-.........))))))))...)-))))...-- ( -29.71)
>DroYak_CAF1 21366 114 + 1
ACAUGAUUUAUCAUCAGAUAUAAAAUGGCGGUGAAAUGAAUAGCAAUCUUGUGGGGCGCUCAUAAAG-AAUAUUCAUAAAUUGGCCU-AUCAACAAGUUGGUGAUUAUC-AUGCAAU--
.((((((..((((((((.........(((.(....(((((((....(((((((((...))))).)))-).)))))))....).))).-.........)))))))).)))-)))....-- ( -29.61)
>DroMoj_CAF1 33877 105 + 1
GUAUGAUUUAUCUACAGAUACGAA--GGCGGUGAAAUGGA--GUUUUCUUGUGC--CGC--AUA-AA-UAUAUUCAUAAAUUGGUCA-AUCAAUUUGGCUAAAAUUACA---GCAAGCG
.(((((..((((....))))....--.((((((....((.--.....))..)))--)))--...-..-.....)))))..(((((((-(.....)))))))).......---....... ( -20.50)
>consensus
GCAUGAUUUAUCAUCAGAUAUAAAAUGGCGGUGAAAUGAAUAGAAAUCUUGUGAGGCGCUCAUAAAA_AAUAUUCAUAAAUUGGCCU_AUCAACAAGUUGGUGAUUAUC_AUGCAAU__
((((.....((((((((.........(((.(....(((((((......((((((.....)))))).....)))))))....).)))...........)))))))).....))))..... (-13.83 = -16.67 +   2.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:12 2006