Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 717,549 – 717,641 |
Length | 92 |
Max. P | 0.927696 |
Location | 717,549 – 717,641 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 95.29 |
Mean single sequence MFE | -25.40 |
Consensus MFE | -22.03 |
Energy contribution | -22.62 |
Covariance contribution | 0.59 |
Combinations/Pair | 1.10 |
Mean z-score | -1.96 |
Structure conservation index | 0.87 |
SVM decision value | 1.19 |
SVM RNA-class probability | 0.927696 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 717549 92 + 22407834 UUGUAGCCGCGUUUCUGCUGUUGUUGUCGUCGUCAUCCUUGGAAUCGUCAUCAUCGACAACUGCAAACAACAUUCGCCUGUCAGCGGCAACA .(((.((((((((..(((.(((((((..(.((...((....))..))....)..))))))).)))))).(((......)))..))))).))) ( -26.20) >DroSec_CAF1 96287 92 + 1 CUGUAGCCGCGUUUCUGCUGUUGUUGUCGUCGUCAUCCUUGGAAUCGUCAUCAUCAACAACUGCAAACAACAUUCGCCUGUCAGCGGCAACA ..((.((((((((..(((.(((((((..(.((...((....))..))....)..))))))).)))))).(((......)))..))))).)). ( -26.40) >DroSim_CAF1 101490 92 + 1 UUGUAGCCGCGUUUCUGCUGUUGUUGUCGUCGUCAUCCUUGGAAUCGUCAUCAUCAACAACUGCAAACAACAUUCGCCUGUCAGCGGCAACA .(((.((((((((..(((.(((((((..(.((...((....))..))....)..))))))).)))))).(((......)))..))))).))) ( -26.50) >DroEre_CAF1 106181 92 + 1 UUGUAGCCGCGUUUCUGCUGUUGUUGUCGUCGUCAUCCUUGGAAUCGUCAUCAUCAACAACUGCAAACAACAUUCGCCUGUCAGCGGCAACA .(((.((((((((..(((.(((((((..(.((...((....))..))....)..))))))).)))))).(((......)))..))))).))) ( -26.50) >DroYak_CAF1 102213 92 + 1 UUGUAGCCGCGUUUCUGCUGUUGUUGUCGUCGUCAUCCUUGGAAUCGUCAUCAUCAACAACUGCAAACAACAUUCGCCUGUCAGCGGCAACA .(((.((((((((..(((.(((((((..(.((...((....))..))....)..))))))).)))))).(((......)))..))))).))) ( -26.50) >DroAna_CAF1 58702 87 + 1 UUGUUGUUGAGUUGC-----UUGUUGUCGUCAUCAUCCUUGGAAUCGUCAUCAUCAACAACUGCAAACAACAUUCGCCUGUCAGCGGCAACA .(((((((.(((((.-----(((.((.((...(((....)))...)).))....))))))))...)))))))...(((.......))).... ( -20.30) >consensus UUGUAGCCGCGUUUCUGCUGUUGUUGUCGUCGUCAUCCUUGGAAUCGUCAUCAUCAACAACUGCAAACAACAUUCGCCUGUCAGCGGCAACA .(((.((((((((..(((.(((((((..(.((...((....))..))....)..))))))).)))))).(((......)))..))))).))) (-22.03 = -22.62 + 0.59)
Location | 717,549 – 717,641 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 95.29 |
Mean single sequence MFE | -28.38 |
Consensus MFE | -23.77 |
Energy contribution | -24.97 |
Covariance contribution | 1.19 |
Combinations/Pair | 1.03 |
Mean z-score | -1.88 |
Structure conservation index | 0.84 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.690712 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 717549 92 - 22407834 UGUUGCCGCUGACAGGCGAAUGUUGUUUGCAGUUGUCGAUGAUGACGAUUCCAAGGAUGACGACGACAACAACAGCAGAAACGCGGCUACAA (((.(((((......((...(((((((.(..(((((((....((.......))....)))))))..))))))))))......))))).))). ( -28.10) >DroSec_CAF1 96287 92 - 1 UGUUGCCGCUGACAGGCGAAUGUUGUUUGCAGUUGUUGAUGAUGACGAUUCCAAGGAUGACGACGACAACAACAGCAGAAACGCGGCUACAG (((.(((((((.(((((((...)))))))))(((((((.((.((.((..((....))...)).)).)).)))))))......))))).))). ( -29.80) >DroSim_CAF1 101490 92 - 1 UGUUGCCGCUGACAGGCGAAUGUUGUUUGCAGUUGUUGAUGAUGACGAUUCCAAGGAUGACGACGACAACAACAGCAGAAACGCGGCUACAA (((.(((((((.(((((((...)))))))))(((((((.((.((.((..((....))...)).)).)).)))))))......))))).))). ( -29.80) >DroEre_CAF1 106181 92 - 1 UGUUGCCGCUGACAGGCGAAUGUUGUUUGCAGUUGUUGAUGAUGACGAUUCCAAGGAUGACGACGACAACAACAGCAGAAACGCGGCUACAA (((.(((((((.(((((((...)))))))))(((((((.((.((.((..((....))...)).)).)).)))))))......))))).))). ( -29.80) >DroYak_CAF1 102213 92 - 1 UGUUGCCGCUGACAGGCGAAUGUUGUUUGCAGUUGUUGAUGAUGACGAUUCCAAGGAUGACGACGACAACAACAGCAGAAACGCGGCUACAA (((.(((((((.(((((((...)))))))))(((((((.((.((.((..((....))...)).)).)).)))))))......))))).))). ( -29.80) >DroAna_CAF1 58702 87 - 1 UGUUGCCGCUGACAGGCGAAUGUUGUUUGCAGUUGUUGAUGAUGACGAUUCCAAGGAUGAUGACGACAACAA-----GCAACUCAACAACAA (((((.((((....))))...((((((((..((((((.((.((..(........).)).))))))))..)))-----)))))....))))). ( -23.00) >consensus UGUUGCCGCUGACAGGCGAAUGUUGUUUGCAGUUGUUGAUGAUGACGAUUCCAAGGAUGACGACGACAACAACAGCAGAAACGCGGCUACAA (((.(((((((.(((((((...)))))))))(((((((.((.((.((..((....))...)).)).)).)))))))......))))).))). (-23.77 = -24.97 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:06 2006