Locus 245

Sequence ID 2L_DroMel_CAF1
Location 717,549 – 717,641
Length 92
Max. P 0.927696
window394 window395

overview

Window 4

Location 717,549 – 717,641
Length 92
Sequences 6
Columns 92
Reading direction forward
Mean pairwise identity 95.29
Mean single sequence MFE -25.40
Consensus MFE -22.03
Energy contribution -22.62
Covariance contribution 0.59
Combinations/Pair 1.10
Mean z-score -1.96
Structure conservation index 0.87
SVM decision value 1.19
SVM RNA-class probability 0.927696
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 717549 92 + 22407834
UUGUAGCCGCGUUUCUGCUGUUGUUGUCGUCGUCAUCCUUGGAAUCGUCAUCAUCGACAACUGCAAACAACAUUCGCCUGUCAGCGGCAACA
.(((.((((((((..(((.(((((((..(.((...((....))..))....)..))))))).)))))).(((......)))..))))).))) ( -26.20)
>DroSec_CAF1 96287 92 + 1
CUGUAGCCGCGUUUCUGCUGUUGUUGUCGUCGUCAUCCUUGGAAUCGUCAUCAUCAACAACUGCAAACAACAUUCGCCUGUCAGCGGCAACA
..((.((((((((..(((.(((((((..(.((...((....))..))....)..))))))).)))))).(((......)))..))))).)). ( -26.40)
>DroSim_CAF1 101490 92 + 1
UUGUAGCCGCGUUUCUGCUGUUGUUGUCGUCGUCAUCCUUGGAAUCGUCAUCAUCAACAACUGCAAACAACAUUCGCCUGUCAGCGGCAACA
.(((.((((((((..(((.(((((((..(.((...((....))..))....)..))))))).)))))).(((......)))..))))).))) ( -26.50)
>DroEre_CAF1 106181 92 + 1
UUGUAGCCGCGUUUCUGCUGUUGUUGUCGUCGUCAUCCUUGGAAUCGUCAUCAUCAACAACUGCAAACAACAUUCGCCUGUCAGCGGCAACA
.(((.((((((((..(((.(((((((..(.((...((....))..))....)..))))))).)))))).(((......)))..))))).))) ( -26.50)
>DroYak_CAF1 102213 92 + 1
UUGUAGCCGCGUUUCUGCUGUUGUUGUCGUCGUCAUCCUUGGAAUCGUCAUCAUCAACAACUGCAAACAACAUUCGCCUGUCAGCGGCAACA
.(((.((((((((..(((.(((((((..(.((...((....))..))....)..))))))).)))))).(((......)))..))))).))) ( -26.50)
>DroAna_CAF1 58702 87 + 1
UUGUUGUUGAGUUGC-----UUGUUGUCGUCAUCAUCCUUGGAAUCGUCAUCAUCAACAACUGCAAACAACAUUCGCCUGUCAGCGGCAACA
.(((((((.(((((.-----(((.((.((...(((....)))...)).))....))))))))...)))))))...(((.......))).... ( -20.30)
>consensus
UUGUAGCCGCGUUUCUGCUGUUGUUGUCGUCGUCAUCCUUGGAAUCGUCAUCAUCAACAACUGCAAACAACAUUCGCCUGUCAGCGGCAACA
.(((.((((((((..(((.(((((((..(.((...((....))..))....)..))))))).)))))).(((......)))..))))).))) (-22.03 = -22.62 +   0.59) 

alignment

Postscript

secondary structure

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dotplot

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Window 5

Location 717,549 – 717,641
Length 92
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 95.29
Mean single sequence MFE -28.38
Consensus MFE -23.77
Energy contribution -24.97
Covariance contribution 1.19
Combinations/Pair 1.03
Mean z-score -1.88
Structure conservation index 0.84
SVM decision value 0.33
SVM RNA-class probability 0.690712
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 717549 92 - 22407834
UGUUGCCGCUGACAGGCGAAUGUUGUUUGCAGUUGUCGAUGAUGACGAUUCCAAGGAUGACGACGACAACAACAGCAGAAACGCGGCUACAA
(((.(((((......((...(((((((.(..(((((((....((.......))....)))))))..))))))))))......))))).))). ( -28.10)
>DroSec_CAF1 96287 92 - 1
UGUUGCCGCUGACAGGCGAAUGUUGUUUGCAGUUGUUGAUGAUGACGAUUCCAAGGAUGACGACGACAACAACAGCAGAAACGCGGCUACAG
(((.(((((((.(((((((...)))))))))(((((((.((.((.((..((....))...)).)).)).)))))))......))))).))). ( -29.80)
>DroSim_CAF1 101490 92 - 1
UGUUGCCGCUGACAGGCGAAUGUUGUUUGCAGUUGUUGAUGAUGACGAUUCCAAGGAUGACGACGACAACAACAGCAGAAACGCGGCUACAA
(((.(((((((.(((((((...)))))))))(((((((.((.((.((..((....))...)).)).)).)))))))......))))).))). ( -29.80)
>DroEre_CAF1 106181 92 - 1
UGUUGCCGCUGACAGGCGAAUGUUGUUUGCAGUUGUUGAUGAUGACGAUUCCAAGGAUGACGACGACAACAACAGCAGAAACGCGGCUACAA
(((.(((((((.(((((((...)))))))))(((((((.((.((.((..((....))...)).)).)).)))))))......))))).))). ( -29.80)
>DroYak_CAF1 102213 92 - 1
UGUUGCCGCUGACAGGCGAAUGUUGUUUGCAGUUGUUGAUGAUGACGAUUCCAAGGAUGACGACGACAACAACAGCAGAAACGCGGCUACAA
(((.(((((((.(((((((...)))))))))(((((((.((.((.((..((....))...)).)).)).)))))))......))))).))). ( -29.80)
>DroAna_CAF1 58702 87 - 1
UGUUGCCGCUGACAGGCGAAUGUUGUUUGCAGUUGUUGAUGAUGACGAUUCCAAGGAUGAUGACGACAACAA-----GCAACUCAACAACAA
(((((.((((....))))...((((((((..((((((.((.((..(........).)).))))))))..)))-----)))))....))))). ( -23.00)
>consensus
UGUUGCCGCUGACAGGCGAAUGUUGUUUGCAGUUGUUGAUGAUGACGAUUCCAAGGAUGACGACGACAACAACAGCAGAAACGCGGCUACAA
(((.(((((((.(((((((...)))))))))(((((((.((.((.((..((....))...)).)).)).)))))))......))))).))). (-23.77 = -24.97 +   1.19) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:06 2006