Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,694,127 – 6,694,224 |
Length | 97 |
Max. P | 0.935666 |
Location | 6,694,127 – 6,694,224 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 67.01 |
Mean single sequence MFE | -22.03 |
Consensus MFE | -10.81 |
Energy contribution | -10.87 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.35 |
Mean z-score | -1.86 |
Structure conservation index | 0.49 |
SVM decision value | 1.25 |
SVM RNA-class probability | 0.935666 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6694127 97 - 22407834 AAUUCAAAUUAAUAGUCGACUGGCAGCGAUUGCCAGUCGGGCUUCGUUUAUACGAUGCGAAAUAUCAUGAUCUCAA------CAUGUGUACUUGAAAAUACCA---------- ..(((((........(((((((((((...)))))))))))((.((((....)))).))...(((.((((.......------)))))))..))))).......---------- ( -26.70) >DroPse_CAF1 17887 74 - 1 AAUUCAAAUUAAUAGUUGACUGGCAGCGAAUCCAGCUCGGGCCAUGUUUAUGCGUUGUG-CAUAUCAUGAUAUUC-------------------------------------- ...............((((((((........)))).))))..((((..(((((.....)-)))).))))......-------------------------------------- ( -13.70) >DroSec_CAF1 7127 91 - 1 AAUUCAAAUUAAUAGUCGACUGGCAGCGAUUCCCAGUCGGGCUUCGUUUAUACGAAGUGAAAUAUCAUGAUCCCAA------CAUAU------GAAAGUACUA---------- ..((((.........((((((((.........))))))))(((((((....)))))))..................------....)------))).......---------- ( -21.10) >DroSim_CAF1 7050 76 - 1 AAUUCAAAUUAAUAGUCGACUGGCAGCGAUUCCCAGUCGGGCUUCGUUUAUACGAAGUUAAAUAUCAUGAUCCCAA------------------------------------- ...(((..........(((((((.........)))))))((((((((....))))))))........)))......------------------------------------- ( -19.80) >DroYak_CAF1 7137 112 - 1 AAUUCAAAUUAAUAGUCGACUGGCAGCGAUUCCCAGUCGGGCUUCGUUUAUGCCUGA-GAAGUAUCAUGAUCGAGAUAUCAUGAUACGUACUUCAGUCGACCCUUACUAUGUU ..............(((((((((((((((..(((....)))..))))...)))).((-(..((((((((((......))))))))))....))))))))))............ ( -37.90) >DroPer_CAF1 16893 74 - 1 AAUUCAAAUUAAUAGUUGACUGGCAGCGAAUCCAGCUCGGGCCACGUUUACACGUUGCG-CAUAUCAUGAUAUUC-------------------------------------- ...(((...........((((((........)))).))(.((.((((....)))).)).-)......))).....-------------------------------------- ( -13.00) >consensus AAUUCAAAUUAAUAGUCGACUGGCAGCGAUUCCCAGUCGGGCUUCGUUUAUACGAUGUGAAAUAUCAUGAUCUCAA_____________________________________ ...(((.........((((((((.........))))))))((.((((....)))).)).........)))........................................... (-10.81 = -10.87 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:07 2006