Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,689,207 – 6,689,324 |
Length | 117 |
Max. P | 0.958962 |
Location | 6,689,207 – 6,689,324 |
---|---|
Length | 117 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.25 |
Mean single sequence MFE | -21.65 |
Consensus MFE | -16.14 |
Energy contribution | -15.70 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.07 |
Mean z-score | -2.53 |
Structure conservation index | 0.75 |
SVM decision value | 1.50 |
SVM RNA-class probability | 0.958962 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6689207 117 - 22407834 UGUCAAACUUACAUCGAAAUUGUCAUUUUUCAAACCGUUUUUUAAACAGAAAAAGUUUUCUUUGAAGAAAAUGGCUCAUAAAGAUA---CUCAUACAUAUGUGAGUGAACAUGUUGGCAG ((((((.(((.....((((........))))...(((((((((..(.(((((....))))).)..)))))))))......))).((---((((((....))))))))......)))))). ( -24.00) >DroSec_CAF1 2210 98 - 1 -----------AAUCGAAAUUGUCAUUUUUCCAACCGUUUUUCAAACAGAAAAAGUUUUCUUUGAACAAAAUGGCUCAAAAAGAUA---CUCACACAUAUGUGAGUGAAC--------AA -----------.(((......((((((((........((((((.....))))))((((.....)))))))))))).......)))(---((((((....)))))))....--------.. ( -19.62) >DroSim_CAF1 2142 101 - 1 -----------AAUCGAAAUUGUCAUUUUUCCAACCGUUUUUCAAACAGAAAACGUUUUCUUUGAACAAAAUGGCUCAAAAAGAUACUACUCACACAUAUGUGAGUGAAC--------AA -----------.(((......((((((((.......((((((......))))))((((.....)))))))))))).......)))..((((((((....))))))))...--------.. ( -21.32) >consensus ___________AAUCGAAAUUGUCAUUUUUCCAACCGUUUUUCAAACAGAAAAAGUUUUCUUUGAACAAAAUGGCUCAAAAAGAUA___CUCACACAUAUGUGAGUGAAC________AA ............(((((((........))))...(((((((((((..(((((....)))))))))..)))))))........)))....((((((....))))))............... (-16.14 = -15.70 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:05 2006