Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,677,028 – 6,677,148 |
Length | 120 |
Max. P | 0.612970 |
Location | 6,677,028 – 6,677,148 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.39 |
Mean single sequence MFE | -43.70 |
Consensus MFE | -29.09 |
Energy contribution | -30.98 |
Covariance contribution | 1.90 |
Combinations/Pair | 1.30 |
Mean z-score | -1.81 |
Structure conservation index | 0.67 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.612970 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6677028 120 - 22407834 UGAAGAAGAGCCGCAUGCAGGAGCUGCUCCAGAAGUGGAUCCAAAUGGGCUACUUCAUGGAGGUGACCGACAGAAUCUACCUAGGUCCACGUAGCCUCGUCGAGCUCAGUUUCUAUUUGA .((((..((((((.(((.(((.((..((((((((((((.(((....)))))))))).)))))((((((...((.......)).))).)))))..)))))))).))))..))))....... ( -42.10) >DroSec_CAF1 13092 120 - 1 UGAAGAAGAGUCGCAUGCAGGAGCUGCUCCAGAAGUGGAUCCAAAUGGGCUACUUCAUGGAGGUGGGCGAGCGAAUCUACCUGGGCCCACGCAGCCUCGUCGAGCUCAGUUUCUAUUUGA .((((..((((((.(((..((.((((((((((((((((.(((....)))))))))).)))).((((((................))))))))))))))))))).)))..))))....... ( -47.09) >DroEre_CAF1 13383 120 - 1 UGAAGAAGAGCCGCAUGCAGGAGCUGCUCCAGAAGUGGACCCAAAUGGGCUACUUCAUGGAGGUGGACGAGAGAAUCUACCUGGGUCCACGCAGCCUCGUCGAGCUCAGUUUCUACUUGG .((((..((((((.(((..((.((((((((((((((((.(((....)))))))))).)))).((((((...((.......))..)))))))))))))))))).))))..))))....... ( -49.90) >DroYak_CAF1 12964 120 - 1 UGAAGAAGAGCCGCAUGCAGGAGCUGCUCCAGAAGUGGACCCAGAUGGGCUAUUUCAUGGAGGUGGACGAGAGAAUCUACCUGGGCCCACGCAGCCUCGUCGAGCUCAGCUUCUACUUGA .((((..((((((.(((..((.((((((((((((((((.(((....)))))))))).))))(((((((....)..)))))).........)))))))))))).))))..))))....... ( -48.60) >DroMoj_CAF1 17428 120 - 1 CCAAGAAGCUGCGCAUGCAAACGCUGCUCCAACUAUGGACCGAAAUGGGUUACUUCUUGGAGUCGGGCGACAGACUCUAUCUGGGUCCACGCAGCAUCGUCGAGUUCGAGUUUUAUUUGC ....((.((((((........(((((((((((.....((((......)))).....)))))))..))))...(((((.....)))))..)))))).)).(((....)))........... ( -39.50) >DroAna_CAF1 13188 120 - 1 UAAAGAAGAGUCGCAUGCAGCAACUGCUCCAGAAAUGGUGCAAUAUGGGGUAUUUUCAGGAGAUCGACGAGAGCAUCUACCUCGGGCCGCGCAGCCUCGUUGAACUCAGCUUUUACCUGA ........(((.((.....)).)))((.(((....))).))......(((((.......(((.((((((((.((.....(....)((...)).)))))))))).)))......))))).. ( -35.02) >consensus UGAAGAAGAGCCGCAUGCAGGAGCUGCUCCAGAAGUGGACCCAAAUGGGCUACUUCAUGGAGGUGGACGAGAGAAUCUACCUGGGUCCACGCAGCCUCGUCGAGCUCAGUUUCUACUUGA .((((..((((((.(((.((..((((((((((((((((.(((....)))))))))).))))((((((........)))))).........)))))))))))).))))..))))....... (-29.09 = -30.98 + 1.90)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:04 2006