Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,675,753 – 6,675,849 |
Length | 96 |
Max. P | 0.581656 |
Location | 6,675,753 – 6,675,849 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 81.93 |
Mean single sequence MFE | -31.45 |
Consensus MFE | -25.91 |
Energy contribution | -25.38 |
Covariance contribution | -0.52 |
Combinations/Pair | 1.25 |
Mean z-score | -1.31 |
Structure conservation index | 0.82 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.581656 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6675753 96 + 22407834 UUAUACCUGGAUAGUUUCUAUCCAUGCAGCCGAUUGCCAGGUGCUUGCCAUCCGGCGAGUACUUGAGGGAAGUGGGCGACUCGACGCUGAAGACCA .......(((((((...))))))).((((....))))((((((((((((....)))))))))))).((....(.((((......)))).)...)). ( -35.50) >DroPse_CAF1 11449 89 + 1 -------UGGAUAGGUUCCAUCCAUGCAGCCAAUGGCGAGGUAUUUGCCAUCGGGCGAAUAUUUAAGCGAAGUCGGUGACUCCACACUGAAAAUCA -------(((((.(....)))))).((.(((...))).(((((((((((....)))))))))))..))((..((((((......))))))...)). ( -29.20) >DroSec_CAF1 11803 96 + 1 CUAUACCUGGAUAGUUUCUAUCCAUGCAGCCGAUGGCCAGCUGCUUGCCAUCCGGCGAGUACUGGAGGGAAGUGGGCGACUCGACGCUGAAGACCA .......(((((((...)))))))............((((.((((((((....)))))))))))).((....(.((((......)))).)...)). ( -32.90) >DroSim_CAF1 14363 96 + 1 CUAUACCUGGAUAGUUUCUAUCCAUGCAGCCGAUGGCCAGGUGCUUGCCAUCCGGCGAGUACUUAAGGGAAGUGGGCGACUCGACGCUGAAGACCA .......(((((((...)))))))....(((.((..((.((((((((((....))))))))))....))..)).)))................... ( -33.70) >DroYak_CAF1 11680 96 + 1 CUAUACCUGGGUAGUCUCUAUCCAUGCAGCCGAUGGCCAGCUGUUUGCCGUCCGGCGAAAACUUGAGGGACGUGGGGAACUCGACGCUAAAGACCA .........(((.((((((.........(((((((((.........))))).)))).........))))))(((..(....)..))).....))). ( -28.17) >DroPer_CAF1 15968 89 + 1 -------UGGAUAGGUGCCAUCCAUGCAGCCAAUGGCGAGGUAUUUGCCAUCGGGCGAAUAUUUAAGCGAAGUCGGUGACUCCACACUGAAAAUCA -------(((((.(....)))))).((.(((...))).(((((((((((....)))))))))))..))((..((((((......))))))...)). ( -29.20) >consensus CUAUACCUGGAUAGUUUCUAUCCAUGCAGCCGAUGGCCAGGUGCUUGCCAUCCGGCGAAUACUUAAGGGAAGUGGGCGACUCGACGCUGAAGACCA .......(((((((...)))))))....(((.((..((.((((((((((....))))))))))....))..)).)))................... (-25.91 = -25.38 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:03 2006