Locus 2441

Sequence ID 2L_DroMel_CAF1
Location 6,672,406 – 6,672,526
Length 120
Max. P 0.748121
window3919

overview

Window 9

Location 6,672,406 – 6,672,526
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.00
Mean single sequence MFE -48.12
Consensus MFE -28.59
Energy contribution -28.73
Covariance contribution 0.14
Combinations/Pair 1.17
Mean z-score -1.95
Structure conservation index 0.59
SVM decision value 0.47
SVM RNA-class probability 0.748121
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6672406 120 + 22407834
CGUCCUUGCUGCGGAAGAAGGAUCCCUGGAAUGUGGUGGCAAACUGCCGCCGCCACAGACCGUUGAAGUAGAUCAGAUUGGUCAGCAACAUUACGCUGCUGCGCACGUUGUCCGGGGCUA
.((((((.((.....))))))))(((((((.(((((((((........)))))))))((((.((((......))))...))))..((((....(((....)))...)))))))))))... ( -48.10)
>DroPse_CAF1 8239 120 + 1
CCUUCUGGUUGCGGAAGAAGGCGCCCUGGUAGGUGCUGGCAAACUGCCGGCGCCACAGUCCAUUGAAGUAGAUGAGAUUGGUGAGCAGCAUCACGCUGCUCCGCACAUUGUCCGGACUCA
...(((((.((((((......((((...((.(((((((((.....)))))))))))((((((((......)))).)))))))).(((((.....)))))))))))......))))).... ( -50.60)
>DroGri_CAF1 15944 120 + 1
CAUCUCUGGUGGUGAAGAAGGGGCCCUCGUAUGUGCUGAAGAACUGACGGCGCCACAGACCCUUAAAAUAGAUGAGAUUCGUGAGCAGCAUAACGCUAUUCUGCACCGUCUCGGGUGUGA
(((((..(..((((.((((..(((.....(((((((((.........))))(((((.((..((((.......))))..))))).)).)))))..))).)))).))))..)..)))))... ( -34.80)
>DroYak_CAF1 8341 118 + 1
--UCCAUGUUGCGGAAAAAGGCACCCUGGAAUGUGGUGGCGAACUGCCGCCGCCACAGACCGUUGAAGUAGAUCAGAUUGGUCAGCAGCAUCACGCUGCUGCGCACGUUGUCCGGAGCGA
--....((((.((((....((((((..((..((((((((((......))))))))))..)).((((......))))...)))(((((((.....))))))).)).)....)))).)))). ( -50.30)
>DroAna_CAF1 8425 120 + 1
AGUCCUUGGUCCGGAAGAACGGUCCCUGGAAGGUGGUGGCGAACUGCCUCCUCCACAGGCCGUUGAAGUAGAUCAGGUUGGUGAGCAGCAUGACGCUGCUCUGGACACUGUCCGGAGUAA
......((.((((((..(((((((..((((.((.((..(....)..)).))))))..))))))).........((((((.(.(((((((.....)))))))).))).))))))))).)). ( -54.30)
>DroPer_CAF1 12760 120 + 1
CCUUCUGGUUGCGGAAGAAGGCGCCCUGGUAGGUGCUGGCAAACUGCCGGCGCCACAGUCCAUUGAAGUAGAUGAGAUUGGUGAGCAGCAUCACGCUGCUCCGCACAUUGUCCGGACUCA
...(((((.((((((......((((...((.(((((((((.....)))))))))))((((((((......)))).)))))))).(((((.....)))))))))))......))))).... ( -50.60)
>consensus
CCUCCUUGUUGCGGAAGAAGGCGCCCUGGAAGGUGCUGGCAAACUGCCGCCGCCACAGACCGUUGAAGUAGAUCAGAUUGGUGAGCAGCAUCACGCUGCUCCGCACAUUGUCCGGAGUCA
...........((((..........(((....((((((((.....))))))))..)))......................(((((((((.....))))))).))......))))...... (-28.59 = -28.73 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:02 2006