Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,670,043 – 6,670,140 |
Length | 97 |
Max. P | 0.857110 |
Location | 6,670,043 – 6,670,140 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 79.46 |
Mean single sequence MFE | -31.08 |
Consensus MFE | -19.56 |
Energy contribution | -20.03 |
Covariance contribution | 0.47 |
Combinations/Pair | 1.21 |
Mean z-score | -1.98 |
Structure conservation index | 0.63 |
SVM decision value | 0.81 |
SVM RNA-class probability | 0.857110 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6670043 97 + 22407834 AGCGCAUGCCAAUGUGAUAAUGCGAAACGCCGUAAUGAAGCGAAAAAUUGAGGAGCAGACCUCGAAGCUUAUCAAUGGCGGUGC------------CAAGCAUCAGGCA .((((.(((((...((((((.((....(((.........))).....((((((......)))))).)))))))).)))))))))------------...((.....)). ( -30.50) >DroPse_CAF1 5866 109 + 1 GGCCCAUGCCAAUCUAAUAAUGAGAAAUGCUGUAAUGAAGCGUAAAAUGGAGGAGCAGUCCUCCAUGCUGAUCAAUGGUGGUGCUGUUGUUGGAGUCAAGAAUCCGGCA (((((..((((...............(((((.......)))))...((((((((....)))))))).........)))))).)))..(((((((........))))))) ( -32.60) >DroSec_CAF1 6127 97 + 1 AGCGCAUGCCAAUGUGAUAAUGCGAAACGCCGUAAUGAAGCGAAAAAUGGAGGAGCAGACCUCAAAGCUUAUCAAUGGCGGUGC------------CAAGCAUCAGGCC .((((.(((((...((((((.((....(((.........))).......((((......))))...)))))))).)))))))))------------...((.....)). ( -28.00) >DroYak_CAF1 6053 97 + 1 AGCGCAUGCCAAUGUGAUAAUGCGAAACGCUGUAAUGAAGCGAAAAAUGGAGGAGCAGACCUCCAAGCUCAUUAAUGGCGGUGC------------CAAGCAUCAGACG .((((.(((((..((((....((....((((.......)))).....((((((......)))))).))))))...)))))))))------------............. ( -30.80) >DroAna_CAF1 6528 97 + 1 GGCCCAUGCGAAUGUUAUUAUGCGGAAUGCUGUGAUGAAGCGCAAACUGGAGGAGCAGACCUCCAAACUGAUCAGCGCCGGGGC------------CAAGAAUCUUCAA (((((.((((....(((((((((.....)).)))))))..))))...((((((......))))))...............))))------------)............ ( -32.00) >DroPer_CAF1 10381 109 + 1 GGCCCAUGCCAAUCUAAUAAUGAGAAAUGCUGUAAUGAAGCGUAAAAUGGAGGAGCAGUCCUCCAUGCUGAUCAAUGGUGGUGCUGUUGUUGGAGUCAAGAAUCCGGCA (((((..((((...............(((((.......)))))...((((((((....)))))))).........)))))).)))..(((((((........))))))) ( -32.60) >consensus AGCCCAUGCCAAUGUGAUAAUGCGAAACGCUGUAAUGAAGCGAAAAAUGGAGGAGCAGACCUCCAAGCUGAUCAAUGGCGGUGC____________CAAGAAUCAGGCA .((((.(((((................((((.......)))).....((((((......))))))..........)))))))))......................... (-19.56 = -20.03 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:01 2006