Locus 2438

Sequence ID 2L_DroMel_CAF1
Location 6,656,291 – 6,656,397
Length 106
Max. P 0.516272
window3916

overview

Window 6

Location 6,656,291 – 6,656,397
Length 106
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 85.49
Mean single sequence MFE -25.43
Consensus MFE -17.16
Energy contribution -17.56
Covariance contribution 0.40
Combinations/Pair 1.18
Mean z-score -1.70
Structure conservation index 0.67
SVM decision value -0.03
SVM RNA-class probability 0.516272
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6656291 106 + 22407834
UAUAAAGUUGGAUUGUUGCUUAUUAUGACGAAAACAG-C--UGUCAGAAAAAGCUUUUGGCGAUGGAGCUUUCUGCUGUUGUCAUCUGUCUCAUUCCAAACAUUCCACA
......((.(((.((((.........(((((..((((-(--.(.(((((..((((((.......)))))))))))).)))))..)).)))........)))).))))). ( -27.53)
>DroSec_CAF1 21306 106 + 1
UAUAAAGUUGGAAUGUUGCUUAUUAUGACGAAAACAU-C--UGUCAGAAAAAGCUUUCGGCGAUUGAGCUUUUUGCUGUUGUCAACUGUCUCAUUCCAAAUAUUCCACA
.......((((((((..((((.((.(((((.......-.--))))).)).))))....((((((..(((.....)))))))))........)))))))).......... ( -25.70)
>DroSim_CAF1 21457 106 + 1
UAUAAAGUUGGAUUGUUGCUUAUUAUGACGAAAACAU-C--UGUCCGAAAAAGCUUUCGGCGAUUGAGCUUUUUGCUGUUGUCAACUGUCUCAUUCCAAAUAUUCCACA
.......(((((.((..((......((((((...((.-.--((.((((((....))))))))..))(((.....))).))))))...))..)).))))).......... ( -23.70)
>DroEre_CAF1 22207 109 + 1
AAUGAAAUUAGAUUGUUGCUUUUUAUGACGAAAGCAUGUUUUGCCAGGAAAAGCUUUCGGCGGCAGAGCUUUUUGCUGUUGUCAACAAUCAAAUCCCAAACAUUCCACA
..((..(((.((((((.........((((((.((((.((((((((.((((....))))...))))))))....)))).)))))))))))).)))..))........... ( -28.60)
>DroYak_CAF1 21980 107 + 1
AAUAAAGUAAGAUUGUUGCUUAUUAUGACGAAAACAUGC--UGUCAGUGAAAGCUUUCGCCGGCAGAGCUUUCAGCUGUUGUCAACUCACUAAUCCCAAACAUUCCACA
....((((((.....))))))....((((((.......(--((((.(((((....))))).)))))(((.....))).))))))......................... ( -21.60)
>consensus
UAUAAAGUUGGAUUGUUGCUUAUUAUGACGAAAACAU_C__UGUCAGAAAAAGCUUUCGGCGAUAGAGCUUUUUGCUGUUGUCAACUGUCUCAUUCCAAACAUUCCACA
........((((.((((((((.((.(((((...........))))).)).))))....((((((..(((.....)))))))))...............)))).)))).. (-17.16 = -17.56 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:59 2006