Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,653,651 – 6,653,771 |
Length | 120 |
Max. P | 0.666801 |
Location | 6,653,651 – 6,653,771 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.28 |
Mean single sequence MFE | -54.23 |
Consensus MFE | -31.67 |
Energy contribution | -31.83 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.38 |
Mean z-score | -1.77 |
Structure conservation index | 0.58 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.666801 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6653651 120 + 22407834 UCAGAUGGGCACGCUGGAGAACCGAGCUCAUGAGUCCUGGCUGGCAGCGCGCCAGUCGGAGCGCCGUUGCGAAGAAGCGUUGGCCGAAGCUGCCAGCCUGAGGCGUAAGCUGACCACAAU ((((((((((.((.(.....).)).))))))..((((.((((((((((((.((....)).))((((.(((......))).))))....)))))))))).).))).....))))....... ( -52.10) >DroVir_CAF1 27731 120 + 1 ACAGAUGGGCACGCUGGAAAAUCGUGCGCACGAAUCCUGGCUGGCGGCGCGUCAGUCCGAGCGUCGCUGCGAGGAGGCGCAGGCCGAAGCCGCCGGCCUGCGGCGCAAGCUAACGGCCAU .....((.(((((.(.....).))))).))....((((.((.((((((((.((.....)))))))))))).))))(((((((((((.......))))))))(((....)))....))).. ( -62.50) >DroGri_CAF1 25985 120 + 1 ACAGAUGGGCACGCUGGAGAAUCGUGCACACGAAUCGUGGCUGGCGGCGCGUCAAUCGGAACGUCGCAGCGAGGAGGCUCAGGCAGAAGCCGCCGGUUUGCGGCGCAAGCUGACUGCGAU ...((((.((.(((..(.((.((((....)))).))....)..))))).)))).........(((((((((((..(((...(((....))))))..))))((((....)))).))))))) ( -51.30) >DroWil_CAF1 28829 120 + 1 CCAAAUGGGCACAUUAGAGAAUCGUGCUCAUGAAUCGUGGCUGGCUGCUCGUCAAUCGGAGCGCCGCUGCGAAGAAGCAUUGGCUGAGGCAGCCGGUUUGCGUCGCAAACUCACGGCCAU ....(((((((((((....))).)))))))).....(((((((((((((((.....))....((((.(((......))).))))...)))))))(((((((...)))))))...)))))) ( -47.40) >DroMoj_CAF1 28011 120 + 1 GCAGAUGGGCACGCUGGAGAAUCGUGCACACGAAUCGUGGCUGGCGGCGCGCCAGGCCGAUCGGCGACGGGAGGAGGCGCAGGCUGAAGCCGCCGGCUAUCGGCGACAGAUGACAGCCAU .......(((.(((((..((.((((....)))).))(((((((((((((((((...((..(((....)))..)).)))))........))))))))))))))))).(....)...))).. ( -55.40) >DroAna_CAF1 18388 120 + 1 ACAGAUGGGAACGCUCGAAAAUCGGGCCCAUGAGUCCUGGCUGGCGGCACGUCAGUCGGAGCGCCGGUGCGAAGAGGCACUGGCUGAAGCCGCCGGGCUGCGGCGCAAGCUGACUACCAU ....((((....(((((.....))))).....((((((((((((((...))))))))))(((((((((((......))))))))....(((((......)))))....))))))).)))) ( -56.70) >consensus ACAGAUGGGCACGCUGGAGAAUCGUGCACACGAAUCCUGGCUGGCGGCGCGUCAGUCGGAGCGCCGCUGCGAAGAGGCGCAGGCUGAAGCCGCCGGCCUGCGGCGCAAGCUGACGGCCAU .....((.(((((.(.....).))))).))........((((((((((..((........))(((..(((......)))..)))....))))))))))...(((....)))......... (-31.67 = -31.83 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:58 2006