Locus 2436

Sequence ID 2L_DroMel_CAF1
Location 6,651,364 – 6,651,475
Length 111
Max. P 0.584002
window3914

overview

Window 4

Location 6,651,364 – 6,651,475
Length 111
Sequences 5
Columns 111
Reading direction forward
Mean pairwise identity 80.49
Mean single sequence MFE -31.98
Consensus MFE -21.14
Energy contribution -22.18
Covariance contribution 1.04
Combinations/Pair 1.12
Mean z-score -1.64
Structure conservation index 0.66
SVM decision value 0.10
SVM RNA-class probability 0.584002
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6651364 111 + 22407834
UACACGAAGAAUCAGAGCAGCUGCAGCGCUCAAGUGAGGAAGCGGAGCCACAACUGAGCGUUCAGGAAGCCAACAUGCAGCAGCUUAAUGACUCUGUGGAUUCGCAGUCCA
.......(((.(((((((.(((((((((((((..((.((........)).))..)))))))...((...))....)))))).))))..))).))).(((((.....))))) ( -36.30)
>DroSec_CAF1 16460 111 + 1
UACACAAAGAAUCAGAGCAGCUGCAGCGCUCAAGUGAGGAAGCGGAGCCACAACUGAGCGUUCAGGAAGCCAACAUGCAGCAGCUUAAUGAUUCUGUGGAUGCGCAGUCCA
.......(((((((((((.(((((((((((((..((.((........)).))..)))))))...((...))....)))))).))))..))))))).(((((.....))))) ( -40.20)
>DroSim_CAF1 16580 111 + 1
UACACGAAGAAUCAGAGCAGCUGCAGCGCUCAAGUGAGGAAGCGGAGCCACAACUGAGCGUUCAGGAAGACAACAUGCAGCAGCUUAAUGACUCUGUGGAUGCGCAGUCCA
.......(((.(((((((.(((((((((((((..((.((........)).))..)))))))...(.....)....)))))).))))..))).))).(((((.....))))) ( -35.70)
>DroEre_CAF1 17291 84 + 1
UACAGGAAGAAUCAGAGCAGCUGCAGCGAUCAAGUGAGGAAGCGCAGCCACAACUGAU---------------------------UAAUGAUUUUGUGGAUGCACAGUCUA
.((((((..((((((....(((((.((..((....))....))))))).....)))))---------------------------).....))))))((((.....)))). ( -20.40)
>DroYak_CAF1 17120 93 + 1
UACACGAAGAAUCAGAGCAGCUGCAGCGAUCAAGUGAGGAAGCGCAGCCACAACUGAGCGUUCAGGU------------------GGGCGAUUCUGUGGAUGCACAGUCCA
.......((((((...((.(((.(.((......))...).))))).(((.((.(((......))).)------------------)))))))))).(((((.....))))) ( -27.30)
>consensus
UACACGAAGAAUCAGAGCAGCUGCAGCGCUCAAGUGAGGAAGCGGAGCCACAACUGAGCGUUCAGGAAG_CAACAUGCAGCAGCUUAAUGAUUCUGUGGAUGCGCAGUCCA
.......(((((((..((....))((((((((..((.((........)).))..))))))))..........................))))))).(((((.....))))) (-21.14 = -22.18 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:57 2006