Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,650,175 – 6,650,270 |
Length | 95 |
Max. P | 0.511221 |
Location | 6,650,175 – 6,650,270 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 84.44 |
Mean single sequence MFE | -39.05 |
Consensus MFE | -24.40 |
Energy contribution | -26.27 |
Covariance contribution | 1.87 |
Combinations/Pair | 1.14 |
Mean z-score | -2.75 |
Structure conservation index | 0.62 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.511221 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6650175 95 - 22407834 GCAAUGGCCUCCAGGGGAAGCUCAGUUCCUUCUAUAACCUGCACUUGGGCCUUGGAAGCCGCAGUAGGA---UCAGGAACCUGCUGAUCCUGCAGCUU .....(((.(((((((((((........)))).....(((......)))))))))).)))((.((((((---((((.......)))))))))).)).. ( -39.60) >DroPse_CAF1 18942 95 - 1 GGAAUUGCCUCCAUUGGCAGCUGAGUGCCGUCUACCAUCUGCA---GGACUUGAGAUGACGCGGUUGGAACAUCGGGUACCUGUUGGUCAUCCACCUC (((..((((......))))((.....)).....((((...(((---((((((((..(..((....))..)..)))))).)))))))))..)))..... ( -25.70) >DroSec_CAF1 15241 95 - 1 GCAAUGGCCUCCAGGGGAAGCUCAGUUCCUUCUAUAACCUGCACUUGGGUCUUGGACGCCGCAGUAGGA---UCAGGAACCUGCUGAUCCUGCAGCUU .....(((.(((((((((((........)))))...((((......)))))))))).)))((.((((((---((((.......)))))))))).)).. ( -38.90) >DroSim_CAF1 15361 95 - 1 GCAAUGGCCUCCAGGGGAAGCUCAGUUCCUUCUAUAACCUGCACUUGGGCCUUGGAAGCCGCAGUAGGA---UCAGGAACCUGCUGAUCCUGCAGGUU ((...(((.(((((((((((........)))).....(((......)))))))))).))))).((((((---((((.......))))))))))..... ( -37.90) >DroEre_CAF1 16180 95 - 1 GGAAUGGCUUCCAGGGGAAGCUCAGUGCCUUCUACAACCUGCACUUGGGCUUUGGAAGCCGCCGUAGGA---UCUGGAACCUGCUGAUCCUGCAGCUU .....((((((((....(((((((((((............)))).)))))))))))))))((.((((((---((.((......)))))))))).)).. ( -41.70) >DroYak_CAF1 15952 95 - 1 GGAAUGGCUUCCAGGGGAAGCUCAGUGCCAUCAAUAACCUGCACUGGGGCCUUGGAAGCCGCCGUAGGA---UCAGGAACCUGCUGAUCCUGCAGCUU .....(((((((((((....((((((((............)))))))).)))))))))))((.((((((---((((.......)))))))))).)).. ( -50.50) >consensus GCAAUGGCCUCCAGGGGAAGCUCAGUGCCUUCUAUAACCUGCACUUGGGCCUUGGAAGCCGCAGUAGGA___UCAGGAACCUGCUGAUCCUGCAGCUU .....(((.(((((((((((........)))).....(((......)))))))))).)))((.((((((....(((....)))....)))))).)).. (-24.40 = -26.27 + 1.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:55 2006