Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,648,097 – 6,648,200 |
Length | 103 |
Max. P | 0.912450 |
Location | 6,648,097 – 6,648,200 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 94.94 |
Mean single sequence MFE | -29.54 |
Consensus MFE | -25.72 |
Energy contribution | -26.08 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.04 |
Mean z-score | -1.57 |
Structure conservation index | 0.87 |
SVM decision value | 1.08 |
SVM RNA-class probability | 0.912450 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6648097 103 - 22407834 CUGGCAACACCGCCCGUUGGACACAGCAUGAAAAUGCGCAACUCAGUUUCUAUUUCUAUCUUUCGCAUUUUCAACGUCUUUGUGAUCGGUUGUUGUUGGGUCG (..(((((((((..(((((....)))).((((((((((......((.........))......))))))))))..........)..))).))))))..).... ( -29.40) >DroSec_CAF1 13172 103 - 1 CUGGCAACACCGGCCGUUGGACACAGCAUGAAAAUGCGCAACUCAGUUUCUAUUUCUAUCUUUCGCAUUUUCAACGUCUUUGUGAUCGGUUGUUGUUGGGUCG (..(((((((((..(((((....)))).((((((((((......((.........))......))))))))))..........)..))).))))))..).... ( -32.00) >DroSim_CAF1 13227 103 - 1 CUGGCAACACCGGCCGUUGGACACAGCAUGAAAAUGCGCAACUCAGUUUCUAUUUCUAUCUUUCGCAUUUUCAACGUCUUUGUGAUCGGUUGUUGUUGGGUCG (..(((((((((..(((((....)))).((((((((((......((.........))......))))))))))..........)..))).))))))..).... ( -32.00) >DroEre_CAF1 13808 101 - 1 CUGGCAACACCGCUCAUCGGC--CAGCAUGAAAAUGCGCAACUCGGUUUCUAUUUCUAUCUUUCGCAUUUUCAACGUCUUUGUGAUCGGUUGUUGUUGGGUAG (..(((((((((.((((.(((--.....((((((((((......((.........))......))))))))))..)))...)))).))).))))))..).... ( -29.70) >DroYak_CAF1 13646 101 - 1 GUGGCAACACCGCUCGUUGGC--CAGCAUGAAAAUGCGCAACUCGGUUUCUAUUUCUAUCUUUCGCAUUUUCAACGUCUUUGUGAUCGGUUGUUGUUGGGUCG (((....)))........(((--(((((((((((((((......((.........))......)))))))))).((((.....)).)).....)))).)))). ( -24.60) >consensus CUGGCAACACCGCCCGUUGGACACAGCAUGAAAAUGCGCAACUCAGUUUCUAUUUCUAUCUUUCGCAUUUUCAACGUCUUUGUGAUCGGUUGUUGUUGGGUCG (..(((((((((..(((((....)))).((((((((((......((.........))......))))))))))..........)..))).))))))..).... (-25.72 = -26.08 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:54 2006