Locus 2433

Sequence ID 2L_DroMel_CAF1
Location 6,647,592 – 6,647,691
Length 99
Max. P 0.712393
window3911

overview

Window 1

Location 6,647,592 – 6,647,691
Length 99
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 73.12
Mean single sequence MFE -27.42
Consensus MFE -11.14
Energy contribution -11.44
Covariance contribution 0.31
Combinations/Pair 1.40
Mean z-score -1.97
Structure conservation index 0.41
SVM decision value 0.38
SVM RNA-class probability 0.712393
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6647592 99 + 22407834
GGGUG---U-GUGUGCGGCUGUACUGCGUGCAAGUGUGAGUGUG--UAUUUUUGUGGGAAUAACACGCGCCCUGUUGCAUGCAAAACUCAAAUUAAAAGGCAAAU
((((.---(-((((((((((((((...)))))((.(((.((((.--((((((....)))))))))).))).))))))))))))..))))................ ( -28.80)
>DroVir_CAF1 20668 85 + 1
GUGUGU-GU-AUAUAC---------AUAUAUAAAUAUGUGUGUG--------UGUGCGAAUAACACGCGCCCUGUUGCAUGCAAAAUUCAAAUUAAAAGCCA-AU
((((.(-((-((((((---------((((((....)))))))))--------))))))....))))(((......)))........................-.. ( -22.10)
>DroGri_CAF1 18836 84 + 1
-----------UGUAU---------GUAUGUAAAUGUGUGUGUGUAUGGCUGUCUGCGAAUAACACGCGCCCUGUUGCAUGCAAAAUUCAAAUUAAAAGCCA-AU
-----------....(---------((((((((..((((((((...(.((.....)).)...))))))))....)))))))))...................-.. ( -24.00)
>DroSec_CAF1 12664 101 + 1
GGGUGA-GU-GUGUGCGGCUGUACUGCGUGCAAGUGUGAGUGUG--UGUUUUUGUGGGAAUAACACGCGCCCUGUUGCAUGCAAAACUCAAAUUAAAAGGCAAAU
...(((-((-..((((....))))(((((((((..(.(.(((((--((((.((.....)).)))))))))))..)))))))))..)))))............... ( -32.00)
>DroSim_CAF1 12720 101 + 1
GGGUGU-GU-GUGUGCGGCUGUACUGCGUGCUAGUGUGAGUGUG--UGUUUUUGUGGGAAUAACACGCGCCCUGUUGCAUGCAAAACUCAAAUUAAAAGGCAAAU
((((..-.(-(((((((((.((((...))))........(((((--((((.((.....)).)))))))))...))))))))))..))))................ ( -30.10)
>DroAna_CAF1 12414 93 + 1
GGGUGAAGUGGGGAGUGGGGGGACUGUUGGCGGACAUGAGUUUG--U----------GAAUAGCACGCGCCCUGUUGCAUGCAAAACUCAAAUUAAAAGGCAAAU
(.(((.((..(((.(((....(.(((((.((((((....)))))--)----------.)))))).))).)))..)).))).)....................... ( -27.50)
>consensus
GGGUG__GU_GUGUGCGGCUGUACUGCGUGCAAAUGUGAGUGUG__UGUUUUUGUGGGAAUAACACGCGCCCUGUUGCAUGCAAAACUCAAAUUAAAAGGCAAAU
.........................((((((((..(((.((((...................)))).)))....))))))))....................... (-11.14 = -11.44 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:53 2006