Locus 2432

Sequence ID 2L_DroMel_CAF1
Location 6,645,682 – 6,645,778
Length 96
Max. P 0.555551
window3910

overview

Window 0

Location 6,645,682 – 6,645,778
Length 96
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 80.94
Mean single sequence MFE -20.98
Consensus MFE -16.51
Energy contribution -17.20
Covariance contribution 0.69
Combinations/Pair 1.05
Mean z-score -1.43
Structure conservation index 0.79
SVM decision value 0.04
SVM RNA-class probability 0.555551
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6645682 96 + 22407834
---------------------ACUGCAAGCCCGGAAGAAAUCUAACUGCAAUUACCCGGAAAGCCCAUUCUAAUGAUGUAGAGGCGCAACCAGGUGUUUCUAUAUUUAGAAACAGAU---
---------------------.(((.....((((.....................))))........(((((..(((((((((((((......)))))))))))))))))).)))..--- ( -24.30)
>DroSec_CAF1 10825 96 + 1
---------------------ACUGCAAACCCGGAAGAAAUCUAACUGCAAUUACCCGGAAAGCCCAUUCUAAUGAUGUAGAGGCGCAACCAGGUGUUUCUAUAUACAGAAACAGAU---
---------------------.(((.....((((.....................))))........((((....((((((((((((......))))))))))))..)))).)))..--- ( -22.20)
>DroSim_CAF1 10788 117 + 1
ACUGCAAACCAGUGAGCAAAUACUGCAAACCCGGAAGAAAUCUAACUGCAAUUACCCGGAAAGCCCAUUCUAAUGAUGUAGAGGCGCAACCAGGUGUUCCUAUAUACAGAAACAGAU---
.(((.....((((..(((.....))).....(....).......)))).........((.....)).((((....((((((..((((......))))..))))))..)))).)))..--- ( -22.20)
>DroEre_CAF1 11314 88 + 1
---------------------AUUGCAAAACCGGAAAAAAUCUACCUUCAAUUACCCGGAAAGUCCAUUCU-----------GGCGCAACCAGAUGUUUCUAUAUUCAGAAACAGAUCAA
---------------------.........((((.....................))))...(((...(((-----------((.....)))))(((((((......))))))))))... ( -16.70)
>DroYak_CAF1 11108 99 + 1
---------------------ACUGCAAAGCCGGAAGAAAUCUACCUCCAAUUACCCGGAAAGCCCAUUCUAAUGAUGUAGAGGCGCAACCAGAUGUUUCUAUAUUCAGAAACAGAUCAC
---------------------..(((....((((.....................))))...(((...((((......))))))))))......(((((((......)))))))...... ( -19.50)
>consensus
_____________________ACUGCAAACCCGGAAGAAAUCUAACUGCAAUUACCCGGAAAGCCCAUUCUAAUGAUGUAGAGGCGCAACCAGGUGUUUCUAUAUUCAGAAACAGAU___
.......................(((....((((.....................))))...(((...((((......))))))))))......(((((((......)))))))...... (-16.51 = -17.20 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:52 2006