| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 6,629,711 – 6,629,816 |
| Length | 105 |
| Max. P | 0.777362 |
| Location | 6,629,711 – 6,629,816 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 69.23 |
| Mean single sequence MFE | -27.73 |
| Consensus MFE | -9.03 |
| Energy contribution | -9.92 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.32 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.33 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.777362 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6629711 105 + 22407834 AGGUCUGCUGGUCAUCUU-----UGGCUGGAAAGGUGUUAGAAAGCGGAGG-AAACUUUGUAA--AGGGAGCAUUGGAUAUAUUGUUAGUGGAUGGGGACACUUACAAGUCAU ..((((.(..((((....-----))))..)...((((((.....((((((.-...))))))..--....))))))))))...((((.((((........)))).))))..... ( -28.40) >DroSec_CAF1 4113 106 + 1 AGGUCUGCUGGUCAUCUU-----UGGCUAGAAAGGUGUUAGAAAGCGGAGG-AAACUUCGUAAG-AGGGAGCAGUGGAUAUAUUGUUAGUGGAUGGGGACACUUACAAGUCAU ..(((..(((.((.((((-----((((.........))))))..((((((.-...))))))..)-)..)).)))..)))...((((.((((........)))).))))..... ( -33.60) >DroSim_CAF1 4700 88 + 1 AGGUCUGCUGGUCAUCUU-----UGGCUGGAAAGGUGUUAGAAA-------------------G-AGGGAGCAGUGGAUAUAUUGCCAGUGGAUGGGGACACUUACAAGUCAU ..(((..(((.((.((((-----(..((((.......))))..)-------------------)-))))).)))..))).........(((..((....))..)))....... ( -24.40) >DroEre_CAF1 5628 106 + 1 AGCUCUGCUGGUCAUCUU-----CGGUUAUAAAGGUGAUAGAAAGCGGAGGGUAACUUCGUAG--CGGGAGGAAUAGAUAUAUUGUCGGUGGAUGGGGACACUUACAAGUCAU ..(((((((.((((((((-----........))))))))....))))))).((..((((....--..))))..)).(((...((((.((((........)))).))))))).. ( -30.10) >DroYak_CAF1 4288 92 + 1 AGCUCCGCUGGUCAUCUU-----CGGAUAGAAAGGUGAUAGAAAACGGAGGGUAACUUCGUAG--AGGAUGCA--------------AGUGAAUGGGGACACUUACAAGUCAU .(((((.((.((((((((-----(.....).)))))))).....((((((.....))))))))--.))).)).--------------.((((.((....)).))))....... ( -28.30) >DroAna_CAF1 5972 95 + 1 UCCUCUUCUGGUCAUUUUAUUAUUGAAUGAAAAGGUGU-----------------CUUCUUUUGAGGGGAAGAACCCAGAUUUCG-AAGUGAGAGGCGUUACUUACAAGUCAU ......((((.((((((.......))))))...(((.(-----------------((((((.....))))))))))))))....(-(..((.(((......))).))..)).. ( -21.60) >consensus AGCUCUGCUGGUCAUCUU_____UGGCUAGAAAGGUGUUAGAAAGCGGAGG__AACUUCGUAA__AGGGAGCAAUGGAUAUAUUGUCAGUGGAUGGGGACACUUACAAGUCAU .(.(((......((((((.............)))))).......((((((.....))))))......))).)................((((.((....)).))))....... ( -9.03 = -9.92 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:52 2006