Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,625,253 – 6,625,356 |
Length | 103 |
Max. P | 0.851280 |
Location | 6,625,253 – 6,625,356 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 90.37 |
Mean single sequence MFE | -22.47 |
Consensus MFE | -19.29 |
Energy contribution | -19.23 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.11 |
Mean z-score | -1.79 |
Structure conservation index | 0.86 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.851280 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6625253 103 + 22407834 AAAGUUAAAAUACUUCUUAGGUUCAUAGCUAAU------------CGAAUAAAAAUGCUAGCCAGCUUAUGAUGAGCCACAAUAUGAGCCAAAUGGCUGGCUGGAUCAUUAUAAU ..(((((....(((.....)))...)))))...------------........((((((((((((((.....((.((((.....)).))))...))))))))))..))))..... ( -23.40) >DroSec_CAF1 9396 103 + 1 AAAGUUAAAAUAUCUCUUAGGUUCAUAGCUAAU------------CGAAUAAAAAUGCUAGCCAGCUUAUGAUGAGCCACAAUAUGAGCCAAAUGACUGGCUGGGUCAUUAUAAU ...................(((...((((....------------...........)))))))...(((((((((.((.(.....)(((((......))))))).))))))))). ( -22.56) >DroSim_CAF1 9649 103 + 1 AAAGUUAAAAUACUUCUUAGGUUCAUAGCUAAU------------CGAAUAAAAAUGCUAGCCAGCUUAUGAUGAGCCACAAUAUGAGCCAAAUGACUGGCUGGGUCAUUAUAAC .((((......))))....(((...((((....------------...........)))))))...(((((((((.((.(.....)(((((......))))))).))))))))). ( -22.96) >DroYak_CAF1 10045 115 + 1 AAAGAUAAAAUACUUCUUAAGUUCAUAGCUAAUAAAUAAAAAAUGCGAAUAAAAAUGCUAGCCAGCUUAUGAUGAGCCACAAUAUGAGCCAACUGACUGGCUGGGUCUUUAUAAU ((((((..............((((...((...............)))))).......((((((((.(((.(.((.((((.....)).)))).))))))))))))))))))..... ( -20.96) >consensus AAAGUUAAAAUACUUCUUAGGUUCAUAGCUAAU____________CGAAUAAAAAUGCUAGCCAGCUUAUGAUGAGCCACAAUAUGAGCCAAAUGACUGGCUGGGUCAUUAUAAU ..(((((....(((.....)))...)))))..........................(((....)))(((((((((.((.(.....)(((((......))))))).))))))))). (-19.29 = -19.23 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:50 2006