| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 6,621,574 – 6,621,673 |
| Length | 99 |
| Max. P | 0.833552 |
| Location | 6,621,574 – 6,621,673 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 81.10 |
| Mean single sequence MFE | -26.78 |
| Consensus MFE | -13.91 |
| Energy contribution | -16.25 |
| Covariance contribution | 2.34 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.80 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.833552 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6621574 99 - 22407834 AAA-AAACUUCAUCCGCAGAAGCGGAAAAAAUACAUUUGCGCUGUUGCGGCGGAAGUUGAACUUCGGCCAUUUGGGCAGUGAAAGUGGCAGAGUUAA--AAA ...-.((((((..((((((.((((.(((.......))).)))).))))))..)))))).(((((..(((((((.........))))))).)))))..--... ( -34.40) >DroVir_CAF1 12925 91 - 1 GG-AAAACUUUG--C-GAAAAGCGGAAAAAAUAAAUCCACGUUAGUGCAGCGGAAACU---CUUUGGCCAUUUG-GCAGUGAAAGUGGCAAAA-AGA--AAG ..-......(((--(-(....(.(((.........))).).....))))).(....)(---((((.(((((((.-.......)))))))..))-)))--... ( -19.30) >DroSec_CAF1 5770 98 - 1 AA--AAACUUCAUCCUCAGAAGCGGAAAAAAUACAUUUGCGCUGUUGCGGCGGAAGUUAAACUUCGGCCAUUUGGGCAGUGAAAGUGGCAGAGUAAA--AAA ..--.((((((..((.(((.((((.(((.......))).)))).))).))..))))))..((((..(((((((.........))))))).))))...--... ( -27.60) >DroSim_CAF1 5988 100 - 1 AAAAAAACUUCAUCCGCAGAAGCGGAAAAAAUACAUUUGCGCUGUUGCGGCGGAAGUUGAACUUCGGCCAUUUGGGCAGUGAAAGUGGCAGAGUAAA--AAA .....((((((..((((((.((((.(((.......))).)))).))))))..))))))..((((..(((((((.........))))))).))))...--... ( -33.40) >DroEre_CAF1 8661 97 - 1 A---AAACUUCAUCCGCAGAACCGGAAAAAAUACAUUUGCGCUGGUGCGGCGGAAGUUGAACUUCGGCCAUUUGGGCAGUGAAAGUGGCAAAGUAAA--AAA .---.((((((..((((...(((((...(((....)))...)))))))))..))))))..((((..(((((((.........))))))).))))...--... ( -28.20) >DroYak_CAF1 5885 84 - 1 A---GAACUUCAUCCGCAGAACCGGAAAAAAUACAUUUGCGCU---------------GAACUUCGGCCAUUUGGGCAGUGAAAGUGGCAAACUAAAAAAAA .---(((.((((..((((((...............)))))).)---------------))).))).(((((((.........)))))))............. ( -17.76) >consensus AA__AAACUUCAUCCGCAGAAGCGGAAAAAAUACAUUUGCGCUGUUGCGGCGGAAGUUGAACUUCGGCCAUUUGGGCAGUGAAAGUGGCAAAGUAAA__AAA .....((((((.((((......)))).............((((.....))))))))))........(((((((.........)))))))............. (-13.91 = -16.25 + 2.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:50 2006