Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,615,132 – 6,615,231 |
Length | 99 |
Max. P | 0.613914 |
Location | 6,615,132 – 6,615,231 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.66 |
Mean single sequence MFE | -22.33 |
Consensus MFE | -15.96 |
Energy contribution | -15.85 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.08 |
Mean z-score | -1.94 |
Structure conservation index | 0.71 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.613914 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6615132 99 - 22407834 GCUUUGCUUUUUCUAUGAGCUCACACUGCAGUUAUUAUUAUUGGUAUAUAUAAGUUCAUAUUA---------------------ACUUUAUUAGUAAUAAAGCUAUAAAGAGAAUGUGAG ...(..(.((((((....((.......))((((.((((((((((((.....(((((......)---------------------))))))))))))))))))))....)))))).)..). ( -18.10) >DroSec_CAF1 42239 120 - 1 GCUUUGCUUUUUCUAUGAGCUCACACUGCAGUUAUUGUUAUUGGUAUAUAUAAGUUCAUAUUAUGAACUUAUACCAAUAAUUAUACUUUAUUAGUAAUAAAGUUAUAUAGAGAAUGUGAG ...(..(.(((((((((((((...((((.(((....((((((((((((....(((((((...)))))))))))))))))))...)))....)))).....)))).))))))))).)..). ( -31.10) >DroSim_CAF1 43494 99 - 1 GCUUUGCUUUUUCUAUGAGCUCACACUGCAGUUAUUAUUAUUGGUAUAUAUAAGUUCAUAUUA---------------------AUUUUAUUAGUAAUAAAGUUAUAUGGAGAAUGUGAG ...(..(.(((((((((.((.......)).....((((((((((((....(((.......)))---------------------....)))))))))))).....))))))))).)..). ( -17.80) >consensus GCUUUGCUUUUUCUAUGAGCUCACACUGCAGUUAUUAUUAUUGGUAUAUAUAAGUUCAUAUUA_____________________ACUUUAUUAGUAAUAAAGUUAUAUAGAGAAUGUGAG ...(..(.(((((((((.((.......)).....((((((((((((..........................................)))))))))))).....))))))))).)..). (-15.96 = -15.85 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:49 2006