Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,614,571 – 6,614,691 |
Length | 120 |
Max. P | 0.976093 |
Location | 6,614,571 – 6,614,691 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.10 |
Mean single sequence MFE | -35.03 |
Consensus MFE | -34.57 |
Energy contribution | -34.90 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.45 |
Structure conservation index | 0.99 |
SVM decision value | 1.76 |
SVM RNA-class probability | 0.976093 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6614571 120 - 22407834 GAUUCGUUGUGGCUUAUUCAAGUUCCUCGCCCGCCUUACGUCAAUGCUGACGAUACAAUAUUGUUCAUGGGGCUCGAGCUGAAAAUUCACAGCGAAUCCAAAACAUUUAGGGGGAAAAAA (((((((((((..((.((((.((((...((((......(((((....)))))..(((....))).....))))..))))))))))..)))))))))))...................... ( -35.80) >DroSec_CAF1 41674 119 - 1 GAUUCGUUGUGGCUUAUUCAAGUUCCUCGCCCGCCUUACGUCAAUGCUGACGAUACAUUAUUGUUCCCGGGGCUCGAGCUGAAAAUUCAGAGCGAAUCCAAAACAUUUAGGA-AAAAAAA ((((((((.((..((.((((.((((...((((......(((((....)))))..(((....))).....))))..))))))))))..)).))))))))..............-....... ( -32.70) >DroSim_CAF1 42924 119 - 1 GAUUCGUUGUGGCUUAUUCAAGUUCCUCGCCCGCCUUACGUCAAUGCUGACGAUACAUUAUUGUUCACGGGGCUCGAGCUGAAAAUUCACAGCGAAUCCAAAACAUUUAGGA-AAAAAAA (((((((((((..((.((((.((((...((((......(((((....)))))..(((....))).....))))..))))))))))..)))))))))))..............-....... ( -36.60) >consensus GAUUCGUUGUGGCUUAUUCAAGUUCCUCGCCCGCCUUACGUCAAUGCUGACGAUACAUUAUUGUUCACGGGGCUCGAGCUGAAAAUUCACAGCGAAUCCAAAACAUUUAGGA_AAAAAAA (((((((((((..((.((((.((((...((((......(((((....)))))..(((....))).....))))..))))))))))..)))))))))))...................... (-34.57 = -34.90 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:48 2006