Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,614,337 – 6,614,456 |
Length | 119 |
Max. P | 0.868701 |
Location | 6,614,337 – 6,614,456 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.35 |
Mean single sequence MFE | -37.63 |
Consensus MFE | -31.77 |
Energy contribution | -32.77 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.03 |
Mean z-score | -2.17 |
Structure conservation index | 0.84 |
SVM decision value | 0.86 |
SVM RNA-class probability | 0.868701 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6614337 119 + 22407834 ACAAAAUGACGAAAAUCCCCUG-GCACGGGGCUUGAUUUCCUAUCGACAAGCUGCAGAAAGUGAAUCGUUUUGUAAUUUGAGCAGCUGCCCCGUCGUCGUCCAUGGGUGAAAAUGUCACU ......(((((....(((((((-((((((((((((((.....)))))..((((((...((((.............))))..)))))))))))))....).))).))).))...))))).. ( -37.22) >DroSec_CAF1 41449 111 + 1 ACAAAAUGACGAGAAUCCCCUG-GCACGGGGCUUGAUUUCCUAUCGACAAGCUGCAGAAAGUGAAUCGUUUUGUAAUUCGAGCAGCUGCCCCGU---CGUCCAUGGGUGAAAAUG----- ...............(((((((-((((((((((((((.....)))))..((((((.(((.(..((....))..)..)))..)))))))))))))---.).))).))).)).....----- ( -37.60) >DroSim_CAF1 42690 116 + 1 ACAAAAUGACGAAAAUCCCCUG-GCACGGGGCUUGAUUUCCUAUCGACAAGCUGCAGAAAGUGAAUCGUUUUGUAAUUCGAGCAGCUGCCCCGU---CGUCCAUGGGUGAAAAUGUCACU ......(((((....(((((((-((((((((((((((.....)))))..((((((.(((.(..((....))..)..)))..)))))))))))))---.).))).))).))...))))).. ( -41.30) >DroYak_CAF1 43320 117 + 1 ACAAAAUGACGAAAAUCCCCCGAGCACGGGGCUUGAUUUCCUAUCGACAAGCUGCAGAAAGUGAAUCGUUUUGUAAUUUGAGCAGCUGCCCCGU---CGUCCAUCGGUGAAAAUGUCACU ......(((((....((..((((((((((((((((((.....)))))..((((((...((((.............))))..)))))))))))))---.))...)))).))...))))).. ( -34.42) >consensus ACAAAAUGACGAAAAUCCCCUG_GCACGGGGCUUGAUUUCCUAUCGACAAGCUGCAGAAAGUGAAUCGUUUUGUAAUUCGAGCAGCUGCCCCGU___CGUCCAUGGGUGAAAAUGUCACU ......(((((.....(((.((.((((((((((((((.....)))))..((((((.(((.(..((....))..)..)))..)))))))))))))....)).)).)))......))))).. (-31.77 = -32.77 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:47 2006