Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,613,831 – 6,613,951 |
Length | 120 |
Max. P | 0.968196 |
Location | 6,613,831 – 6,613,951 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.98 |
Mean single sequence MFE | -27.00 |
Consensus MFE | -21.69 |
Energy contribution | -24.50 |
Covariance contribution | 2.81 |
Combinations/Pair | 1.03 |
Mean z-score | -2.64 |
Structure conservation index | 0.80 |
SVM decision value | 1.62 |
SVM RNA-class probability | 0.968196 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6613831 120 - 22407834 AUAGAAAAGUGAAAAACGAAAAACGAAAGAGUGCAGGCGAAACAGAAUUGAUUAUACAAAACGUAAAUAAAUACAUCUUUGCGUUCUAUUUGCGUUGGCUUGCGUUCUUUUGUUUAUUUU ....................((((((((((((((((((.........(((......)))((((((((((((..((....))..)).)))))))))).))))))))))))))))))..... ( -32.00) >DroSec_CAF1 40976 106 - 1 AUAGAAAAGCGAA-------AAACGAAAGAGUGCAGGCGAAACAGAAUUGAUUAUACAAAACGUAAAUAAAUACAUCUUUGCA-------AGCGUUGGCUUGCGUUCUUUUGUUUAUUUU .............-------((((((((((((((((((..(((....(((......)))...(((((..........))))).-------...))).))))))))))))))))))..... ( -25.10) >DroSim_CAF1 42172 113 - 1 AUAGAAAAGUGAA-------AAACGAAAGAGUGCAGGCGAAACAGAAUUGAUUAUACAAAACGUAAAUAAAUACAUCUUUGCGUUCUAUUUGCGUUGGCUUGCGUUCUUUUGUUUAUUUU .............-------((((((((((((((((((.........(((......)))((((((((((((..((....))..)).)))))))))).))))))))))))))))))..... ( -32.00) >DroYak_CAF1 42801 112 - 1 AUAAAAAACAGAA-------AAAC-AAAGAGUGCAGGCGAAAAAGAAUUGAUUAUACAAAACGUAAAUAAAUACAUCUUCGCGUUCUAUUUGCGUUGGAUUUCGUACUUUUGUUUAUUUU .............-------((((-((.((((((.............(((......)))((((((((((...((........))..)))))))))).......))))))))))))..... ( -18.90) >consensus AUAGAAAAGUGAA_______AAACGAAAGAGUGCAGGCGAAACAGAAUUGAUUAUACAAAACGUAAAUAAAUACAUCUUUGCGUUCUAUUUGCGUUGGCUUGCGUUCUUUUGUUUAUUUU ....................((((((((((((((((((.........(((......)))(((((((((((((.((....)).))).)))))))))).))))))))))))))))))..... (-21.69 = -24.50 + 2.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:43 2006