Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,610,155 – 6,610,302 |
Length | 147 |
Max. P | 0.988407 |
Location | 6,610,155 – 6,610,262 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.23 |
Mean single sequence MFE | -28.62 |
Consensus MFE | -21.42 |
Energy contribution | -22.86 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.04 |
Mean z-score | -1.90 |
Structure conservation index | 0.75 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.766805 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6610155 107 + 22407834 AAAAUACAAAU----------AAGCCUGCACUUUGACUGCUAGUUGACCCAUAAAUAAAUCAUUUCCGCAA---GCAAAGCGCUGUUGCAUAAUAGAUGCAACGGAUUUAUGUGCGGUAA ...........----------..(((.((((.(..((.....))..).......(((((((.....(((..---.....))).((((((((.....)))))))))))))))))))))).. ( -26.60) >DroSec_CAF1 37383 110 + 1 AAAAUACAAAU----------GAGCCUGCACUUUGACUGCCAGUUGACCCAUAAAUAAAUCAUUUCCGCAAACAGCAAAGCGCAGUUGCAUAAUAGAUGCAGCGGAUUUAUGUGCGGUAA ...........----------..(((.((((.(..((.....))..).......(((((((.....(((..........)))..(((((((.....))))))).)))))))))))))).. ( -26.10) >DroSim_CAF1 38607 110 + 1 AAAAUACAAAU----------GAGCCUGCACUUUGACUGCCAGUUGACCCAUAAAUAAAUCAUUUCCGCAAACAGCAAAGCGCUGUUGCAUAAUAGAUGCAGCGGAUUUAUGUGCGGUAA ...........----------..(((.((((.(..((.....))..).................(((((.((((((.....))))))((((.....)))).))))).....))))))).. ( -30.10) >DroEre_CAF1 38567 119 + 1 AAAAUACAAAUGAGCUGAGUUGAGCUUGCACUUUGACUGCUAGCUGACCCAUAAAUAAAUCAUUUCCGCAAACAGCAAAGCGCUGUUGCAUAAUAGAUG-UGCGGAUUUAUGUGCGGUAA .......((((((..((.(((.((((.(((.......))).))))))).))........))))))(((((((((((.....))))))(((((.....))-))).........)))))... ( -29.50) >DroYak_CAF1 39133 120 + 1 AAAAUACAAAUUUGCUGAGUUGAGCCUGCACUUUGACUGCUAGGUGACCCAUUAAUAAAUCAUUUCCGCAAACAGCAAAGCGCUGUUGCAUAAUGAAUGCCGCGGAUUUAUGUGCGGUAA ...........(((.((.(((..(((((((.......))).))))))).)).)))....(((((...((((.((((.....))))))))..))))).(((((((.(....).))))))). ( -30.80) >consensus AAAAUACAAAU__________GAGCCUGCACUUUGACUGCUAGUUGACCCAUAAAUAAAUCAUUUCCGCAAACAGCAAAGCGCUGUUGCAUAAUAGAUGCAGCGGAUUUAUGUGCGGUAA .......................(((.((((.(((((.....))))).................(((((.((((((.....))))))((((.....)))).))))).....))))))).. (-21.42 = -22.86 + 1.44)
Location | 6,610,155 – 6,610,262 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.23 |
Mean single sequence MFE | -31.04 |
Consensus MFE | -23.28 |
Energy contribution | -24.12 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.04 |
Mean z-score | -2.31 |
Structure conservation index | 0.75 |
SVM decision value | 1.10 |
SVM RNA-class probability | 0.914559 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6610155 107 - 22407834 UUACCGCACAUAAAUCCGUUGCAUCUAUUAUGCAACAGCGCUUUGC---UUGCGGAAAUGAUUUAUUUAUGGGUCAACUAGCAGUCAAAGUGCAGGCUU----------AUUUGUAUUUU .....(((.((((..(((((((((.....))))))).((((((((.---((((.....(((((((....)))))))....)))).)))))))).)).))----------)).)))..... ( -32.80) >DroSec_CAF1 37383 110 - 1 UUACCGCACAUAAAUCCGCUGCAUCUAUUAUGCAACUGCGCUUUGCUGUUUGCGGAAAUGAUUUAUUUAUGGGUCAACUGGCAGUCAAAGUGCAGGCUC----------AUUUGUAUUUU .........((((((..(((((((.....))))).((((((((((((((..(..((.((((.....))))...))..)..)))).))))))))))))..----------))))))..... ( -32.70) >DroSim_CAF1 38607 110 - 1 UUACCGCACAUAAAUCCGCUGCAUCUAUUAUGCAACAGCGCUUUGCUGUUUGCGGAAAUGAUUUAUUUAUGGGUCAACUGGCAGUCAAAGUGCAGGCUC----------AUUUGUAUUUU .........((((((..(((((((.....))))....((((((((((((..(..((.((((.....))))...))..)..)))).)))))))).)))..----------))))))..... ( -29.20) >DroEre_CAF1 38567 119 - 1 UUACCGCACAUAAAUCCGCA-CAUCUAUUAUGCAACAGCGCUUUGCUGUUUGCGGAAAUGAUUUAUUUAUGGGUCAGCUAGCAGUCAAAGUGCAAGCUCAACUCAGCUCAUUUGUAUUUU .....((..........)).-........((((((..(((((((((((((.((.((.((((.....))))...)).)).))))).)))))))).((((......))))...))))))... ( -29.00) >DroYak_CAF1 39133 120 - 1 UUACCGCACAUAAAUCCGCGGCAUUCAUUAUGCAACAGCGCUUUGCUGUUUGCGGAAAUGAUUUAUUAAUGGGUCACCUAGCAGUCAAAGUGCAGGCUCAACUCAGCAAAUUUGUAUUUU ...((((..........))))........((((((..(((((((((((((...((...(((((((....))))))))).))))).))))))))..(((......)))....))))))... ( -31.50) >consensus UUACCGCACAUAAAUCCGCUGCAUCUAUUAUGCAACAGCGCUUUGCUGUUUGCGGAAAUGAUUUAUUUAUGGGUCAACUAGCAGUCAAAGUGCAGGCUC__________AUUUGUAUUUU .....((((.....(((((.((((.....))))((((((.....)))))).)))))..(((((((....))))))).............))))........................... (-23.28 = -24.12 + 0.84)
Location | 6,610,185 – 6,610,302 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.33 |
Mean single sequence MFE | -30.06 |
Consensus MFE | -25.74 |
Energy contribution | -26.14 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.12 |
Mean z-score | -2.01 |
Structure conservation index | 0.86 |
SVM decision value | 2.12 |
SVM RNA-class probability | 0.988407 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6610185 117 + 22407834 UAGUUGACCCAUAAAUAAAUCAUUUCCGCAA---GCAAAGCGCUGUUGCAUAAUAGAUGCAACGGAUUUAUGUGCGGUAAUGUUGUCUAAAAUAUGCAUAAGUCGUAACCGUCGAUUUAA .(((((((............((((.(((((.---..(((...(((((((((.....))))))))).)))...))))).))))..........(((((....).))))...)))))))... ( -29.30) >DroSec_CAF1 37413 120 + 1 CAGUUGACCCAUAAAUAAAUCAUUUCCGCAAACAGCAAAGCGCAGUUGCAUAAUAGAUGCAGCGGAUUUAUGUGCGGUAAUGUUGCCUAAAAAAUGCAUAAGUCGUAACCGUCGAUUUAA ...............((((((...(((((.....((.....))...(((((.....)))))))))).......(((((.(((.(((.........))).....))).))))).)))))). ( -27.00) >DroSim_CAF1 38637 120 + 1 CAGUUGACCCAUAAAUAAAUCAUUUCCGCAAACAGCAAAGCGCUGUUGCAUAAUAGAUGCAGCGGAUUUAUGUGCGGUAAUGUUGCCUAAAAUAUGCAUAAGUCGUAACCGUCGAUUUAA ...............((((((...(((((.((((((.....))))))((((.....)))).))))).......(((((.(((.(((.........))).....))).))))).)))))). ( -32.00) >DroEre_CAF1 38607 119 + 1 UAGCUGACCCAUAAAUAAAUCAUUUCCGCAAACAGCAAAGCGCUGUUGCAUAAUAGAUG-UGCGGAUUUAUGUGCGGUAAUGUUGCCUAAAAUAUGCAUAAGUUAUAACCGUCGAUUUAA ...............((((((...(((((.((((((.....))))))((((.....)))-)))))).......(((((.(((.(((.........))).....))).))))).)))))). ( -28.20) >DroYak_CAF1 39173 120 + 1 UAGGUGACCCAUUAAUAAAUCAUUUCCGCAAACAGCAAAGCGCUGUUGCAUAAUGAAUGCCGCGGAUUUAUGUGCGGUAAUGUUGUCUAAAAUAUGCAUAAGUUGUAACCGCCGAUUUAA ..(....).......((((((...(((((.((((((.....))))))((((.....)))).))))).....(.(((((..((((......))))((((.....)))))))))))))))). ( -33.80) >consensus UAGUUGACCCAUAAAUAAAUCAUUUCCGCAAACAGCAAAGCGCUGUUGCAUAAUAGAUGCAGCGGAUUUAUGUGCGGUAAUGUUGCCUAAAAUAUGCAUAAGUCGUAACCGUCGAUUUAA ...............((((((...(((((.((((((.....))))))((((.....)))).))))).......(((((.(((.(((.........))).....))).))))).)))))). (-25.74 = -26.14 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:39 2006