Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,608,513 – 6,608,633 |
Length | 120 |
Max. P | 0.846221 |
Location | 6,608,513 – 6,608,633 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.33 |
Mean single sequence MFE | -26.49 |
Consensus MFE | -22.23 |
Energy contribution | -21.87 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.14 |
Mean z-score | -1.48 |
Structure conservation index | 0.84 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.713883 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6608513 120 + 22407834 GUCAGGAGUUUUAACGCAUUCUGCUUGUACAAAAAGCGAUAAUAAAUGACCUGCAGUCAUCGGUUUUUGCCGGAGAAAGUUUAAUUAAAUUGGUAAAAUCAAUAAGUAAAUUGAUUACUU (((((((((........)))))((((.......)))).........))))..((..((..((((....))))..))..))...........((((..((((((......)))))))))). ( -20.70) >DroSec_CAF1 35727 120 + 1 GUCAGCAGUUUAAACGCAUUCUGCUUGUGCAAAAAGCGAUAAUAAAUGACCUGCAGUCAUCGGUUUUUGCCGGAGAAAGUUUAAUUAAAUUGGUAAAAUCAAUAAGUAAAUUGAUUACUU .....((((((((..((.((((.((.(.(((((((.(((.......((((.....))))))).)))))))))))))).))....))))))))....(((((((......))))))).... ( -25.31) >DroSim_CAF1 36920 120 + 1 GUCAGCAGUUUAAACGCAUUCUGCUUGUGCAAAAAGCGAUAAUAAAUGACCUGCAGUCAUCGGUUUUUGCCGGAGAAAGUUUAAUUAAAUUGGUAAAAUCAAUAAGUAAAUUGAUUACUU .....((((((((..((.((((.((.(.(((((((.(((.......((((.....))))))).)))))))))))))).))....))))))))....(((((((......))))))).... ( -25.31) >DroEre_CAF1 36862 120 + 1 GUCAGGAGUUUAAGCGCAUUCUGCUUGUGCAAAAAGCGAUAAUAAAUGACCUGCAGUCAUCGCUUUUUGCCAGAGAAAGUUUAAUUAAAUUGGCAAAAUCAAUAAGUAAAUUGAUUACUU (((((....((((((...((((.((.(.(((((((((((.......((((.....)))))))))))))))))))))).)))))).....)))))..(((((((......))))))).... ( -33.71) >DroYak_CAF1 37527 120 + 1 GUCAGGAGCUUAAACGCAUUUUGCUUGUGCAAGAAGCGAUAAUAAAUGACCUGCAGUCAUCACUUUUUGCCAGAGAAAGUUUAAUUAAAUUGGCAAAAUCAAUAGGUAAAUUGAUUACUU (((((..(((((..(((.((((((....)))))).))).......(((((.....)))))....(((((((((...((......))...)))))))))....)))))...)))))..... ( -27.40) >consensus GUCAGGAGUUUAAACGCAUUCUGCUUGUGCAAAAAGCGAUAAUAAAUGACCUGCAGUCAUCGGUUUUUGCCGGAGAAAGUUUAAUUAAAUUGGUAAAAUCAAUAAGUAAAUUGAUUACUU (((((....((((((...(((((.....(((((((.(((.......((((.....))))))).))))))))))))...)))))).....)))))..(((((((......))))))).... (-22.23 = -21.87 + -0.36)
Location | 6,608,513 – 6,608,633 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.33 |
Mean single sequence MFE | -24.55 |
Consensus MFE | -19.54 |
Energy contribution | -19.66 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.10 |
Mean z-score | -1.99 |
Structure conservation index | 0.80 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.846221 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6608513 120 - 22407834 AAGUAAUCAAUUUACUUAUUGAUUUUACCAAUUUAAUUAAACUUUCUCCGGCAAAAACCGAUGACUGCAGGUCAUUUAUUAUCGCUUUUUGUACAAGCAGAAUGCGUUAAAACUCCUGAC ....(((((((......)))))))....................((..(((......)))..))...((((...((((....(((.((((((....)))))).))).))))...)))).. ( -21.70) >DroSec_CAF1 35727 120 - 1 AAGUAAUCAAUUUACUUAUUGAUUUUACCAAUUUAAUUAAACUUUCUCCGGCAAAAACCGAUGACUGCAGGUCAUUUAUUAUCGCUUUUUGCACAAGCAGAAUGCGUUUAAACUGCUGAC ....(((((((......)))))))........................(((((......((((((.....))))))..(((.(((.((((((....)))))).)))..)))..))))).. ( -24.80) >DroSim_CAF1 36920 120 - 1 AAGUAAUCAAUUUACUUAUUGAUUUUACCAAUUUAAUUAAACUUUCUCCGGCAAAAACCGAUGACUGCAGGUCAUUUAUUAUCGCUUUUUGCACAAGCAGAAUGCGUUUAAACUGCUGAC ....(((((((......)))))))........................(((((......((((((.....))))))..(((.(((.((((((....)))))).)))..)))..))))).. ( -24.80) >DroEre_CAF1 36862 120 - 1 AAGUAAUCAAUUUACUUAUUGAUUUUGCCAAUUUAAUUAAACUUUCUCUGGCAAAAAGCGAUGACUGCAGGUCAUUUAUUAUCGCUUUUUGCACAAGCAGAAUGCGCUUAAACUCCUGAC ((((((.....))))))......(((((((..................)))))))((((((((((.....)))))).......((.((((((....)))))).))))))........... ( -27.67) >DroYak_CAF1 37527 120 - 1 AAGUAAUCAAUUUACCUAUUGAUUUUGCCAAUUUAAUUAAACUUUCUCUGGCAAAAAGUGAUGACUGCAGGUCAUUUAUUAUCGCUUCUUGCACAAGCAAAAUGCGUUUAAGCUCCUGAC .(((..(((((......)))))((((((((..................)))))))).......))).((((...((((....(((...((((....))))...)))..))))..)))).. ( -23.77) >consensus AAGUAAUCAAUUUACUUAUUGAUUUUACCAAUUUAAUUAAACUUUCUCCGGCAAAAACCGAUGACUGCAGGUCAUUUAUUAUCGCUUUUUGCACAAGCAGAAUGCGUUUAAACUCCUGAC .((((((((((......)))))))............((((((.................((((((.....)))))).......((.((((((....)))))).)))))))))))...... (-19.54 = -19.66 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:36 2006