Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 714,182 – 714,281 |
Length | 99 |
Max. P | 0.792496 |
Location | 714,182 – 714,281 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 88.60 |
Mean single sequence MFE | -19.17 |
Consensus MFE | -15.40 |
Energy contribution | -14.96 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.31 |
Mean z-score | -1.69 |
Structure conservation index | 0.80 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.792496 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 714182 99 + 22407834 U-CCUUCAAAUUAUAA-CUGUCUUUCCUGAUUGACUGACUGUUCCUCUAAAGUGUUGGUUGAAUUUUGGGGUGGACUUUUCAUCUUUCUCUUACACUUCGU .-..............-..((((.(((..((..((..((..............))..))..)...)..))).))))......................... ( -16.24) >DroSec_CAF1 92932 93 + 1 U-CCUUCAAAUUAUAA-CUGUCUUUCCUGAC------AUUGUCCCCCUAAAGUGUUGGUUGAAUUUUGGGGUGGACUUUUCAUCUUUCUCUUACAUUUCGU .-..............-.((((......)))------)..(((((((((((((.........))))))))).))))......................... ( -20.60) >DroSim_CAF1 98109 93 + 1 U-CCUUCAAAUUAUAA-CUGUCUUUCCUGAC------AUUGUCCCCCUAAAGUGUUGGUUGAAUUUUGGGGUGGACUUUUCAUCUUUCUCUUACACUUCGU .-..............-.((((......)))------)..(((((((((((((.........))))))))).))))......................... ( -20.60) >DroEre_CAF1 102694 94 + 1 UCCCCUGAAAUUAUACUCGGUCUUUCCUGAC------AUUGUCCCCCC-AAGUGUUGGUUGAAUUUUGGGGUGGACUUUUCAUCUUUAUCUUACACUUCGU .....(((((.........(((......)))------...((((((((-(((............))))))).)))).)))))................... ( -21.60) >DroYak_CAF1 98707 94 + 1 UCCCUUCAAAUUAGAG-CUGUCUUUCCUGAA------UUUGUUUCCCUAAAGUGUUGGUUGGAUUUUGGGGUGGACUUUUCAUCUUUCGCUUACACUUCGU .............(((-(.(.......((((------...(((((((((((((.(.....).))))))))).))))..)))).....)))))......... ( -16.80) >consensus U_CCUUCAAAUUAUAA_CUGUCUUUCCUGAC______AUUGUCCCCCUAAAGUGUUGGUUGAAUUUUGGGGUGGACUUUUCAUCUUUCUCUUACACUUCGU ...................(((......))).........(((((((((((((.........))))))))).))))......................... (-15.40 = -14.96 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:59 2006