Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,605,285 – 6,605,405 |
Length | 120 |
Max. P | 0.644959 |
Location | 6,605,285 – 6,605,405 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.56 |
Mean single sequence MFE | -29.68 |
Consensus MFE | -7.96 |
Energy contribution | -9.38 |
Covariance contribution | 1.42 |
Combinations/Pair | 1.16 |
Mean z-score | -1.72 |
Structure conservation index | 0.27 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.644959 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6605285 120 + 22407834 ACGUAUCUCACUGACAUUUGGGGCAACUCAAUGCAAACCGAAACUGCGAGACGCAAACACAUGUUUUGGCAUUGCAGAAACUGCAGCGAAAUUUUCUGAUACAGAAAACAUAUUUCGAUG ...((((((.(((.((.(((((....)))))(((((.(((((((((((...)))).......)))))))..))))).....))))).))..(((((((...)))))))........)))) ( -29.21) >DroSec_CAF1 32596 106 + 1 ACGACUUUUAGUGGCAUAUGGGGAAACUCGAUGCAAACCGAA--------------ACACAUGUUUUGGCAUUGCUGAAACUGCAUGGAAAUUUUCUGAUACAGAAAAGAUAUUUCGAUG .....(((((((.((((.((((....))))))))...(((((--------------((....)))))))....)))))))...(((.(((((((((((...))))))....))))).))) ( -30.10) >DroSim_CAF1 33808 106 + 1 ACGACUUUUAGUGGCAUUUGGGGCAACUCGAUGCAAACCGAA--------------ACACAUGUUUUGGCAUUGCAGAAACUGCAUGGAAAUUUUCUGAUACAGAAAACAUAUUUCGAUG ........((((..(..(((((....)))))(((((.(((((--------------((....)))))))..))))))..))))(((.(((((((((((...))))))....))))).))) ( -29.20) >DroEre_CAF1 33691 99 + 1 GCGU---------------------ACUCGAUGCAAACCGAAACUGCGAGACGCAAACACAUGUUUUGGCUUUUCAGAAGCUGCAGGCAAACUUGCUGAUACAGAAAACAUAUUUCGAUG ((((---------------------.((((................))))))))......(((((((((((((...))))))(((((....)))))........)))))))......... ( -22.99) >DroYak_CAF1 34287 117 + 1 GCGUGUUUCGGUGGCAUUUG---CAACUCGUUGCAAGCUGAAACUGCGAGACGCAAGCACAUGUUUUGGCUUUGCAGAAGAUGCAGGGAAAUUGGCUGAUACGGAAAGCAUGUUUCGAUG ((((.((.((((..((((((---(((....))))))).))..)))).)).))))....(((((((((..(((((((.....))))))).......(((...))))))))))))....... ( -36.90) >consensus ACGUCUUUCAGUGGCAUUUGGGGCAACUCGAUGCAAACCGAAACUGCGAGACGCAAACACAUGUUUUGGCAUUGCAGAAACUGCAGGGAAAUUUUCUGAUACAGAAAACAUAUUUCGAUG .((........................((.(((((.........(((.....))).......((((..((...))..))))))))).))..(((((((...))))))).......))... ( -7.96 = -9.38 + 1.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:34 2006