Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,604,725 – 6,604,816 |
Length | 91 |
Max. P | 0.613067 |
Location | 6,604,725 – 6,604,816 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 84.70 |
Mean single sequence MFE | -29.76 |
Consensus MFE | -19.13 |
Energy contribution | -19.41 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.09 |
Mean z-score | -1.96 |
Structure conservation index | 0.64 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.613067 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6604725 91 - 22407834 AAAUUUGCCCAGCCACU-CCACAGUUUCGGGCCCAGUGGUUUGUUUUGUCUCUCCCACAAUUUGUUGCA-------GGCUGUGCCAGCUGCAGCAACUA ......((((.(..(((-....)))..)))))...((((...(........)..))))...((((((((-------(.(((...))))))))))))... ( -24.20) >DroSec_CAF1 32034 89 - 1 AAAUUUGCCCAGCCACCGUCCCGCCUUCGGGCCCAGUGGUUUGUUUUGUCUUUCCCACAAUUUGUUGCA-------GGCUGUGGCAGCUGCAGCAA--- .....(((((((((........(((....)))...((((...(......)....))))...........-------))))).))))((....))..--- ( -29.00) >DroSim_CAF1 33240 89 - 1 AAAUUUGCCCAGCCACCACCCCGCCUUCGGGCCCAGUGGUUUGUUUUGUCUCUGCCACAAUUUGUUGCA-------GGCUGUGGCAGCUGCAGCAA--- .....((((((((((((((...(((....)))...)))))............(((.((.....)).)))-------))))).))))((....))..--- ( -35.20) >DroEre_CAF1 33203 91 - 1 AAAUUUGCCUUGCCACCC---CACAUUCGGGCCCAGUGGUUUGUUUUGUC--UGCCGCAAUUUGUUGCUGGCUGCUGGCUGUGGCAGCUGCAGCAA--- ....(((((..(((((((---(......)))....)))))..).......--....)))).(((((((.(((((((......))))))))))))))--- ( -30.00) >DroYak_CAF1 33781 87 - 1 AAAUUUGCCCUGCCACCCACACACUUUUGGGCCCAGUGGUUUGUUUUGUC--UGCCACAAUUCGUUGCA-------GGCUGUGGCAGCUGCAGCAA--- ....((((.(((((((..(((.(((.(((....))).))).)))...(((--(((.((.....)).)))-------))).)))))))..))))...--- ( -30.40) >consensus AAAUUUGCCCAGCCACCCCCACACCUUCGGGCCCAGUGGUUUGUUUUGUCU_UGCCACAAUUUGUUGCA_______GGCUGUGGCAGCUGCAGCAA___ ......((((..................))))...(((((..(......)...)))))...(((((((........(((((...))))))))))))... (-19.13 = -19.41 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:33 2006