Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,604,325 – 6,604,419 |
Length | 94 |
Max. P | 0.997996 |
Location | 6,604,325 – 6,604,419 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 77.77 |
Mean single sequence MFE | -21.75 |
Consensus MFE | -14.94 |
Energy contribution | -14.86 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.15 |
Mean z-score | -2.84 |
Structure conservation index | 0.69 |
SVM decision value | 2.98 |
SVM RNA-class probability | 0.997996 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6604325 94 + 22407834 ----UAUAUAUUUGUAGA-----AUAUACA----UAUAUAUUAACACCACAUGGCAGCCACAAA-AAUAAACUCAACUGCUGCUGUCGAGUGGAAAAUGCAAUG----UUCU ----.((((((.((((..-----...))))----.)))))).....((((.(((((((..((..-............))..))))))).))))...........----.... ( -20.94) >DroSec_CAF1 31634 94 + 1 ----UAUAUAUUUGUAGA-----AUAUACA----UAUAUAUUAACACCACAUGGCAGCCACAAA-AAUAAACUCAACUGCUGCUGCCGAGUGGAAAAUGCAAUG----UUCU ----.((((((.((((..-----...))))----.)))))).....((((.(((((((..((..-............))..))))))).))))...........----.... ( -23.64) >DroSim_CAF1 32840 94 + 1 ----UAUAUAUUUGUAGA-----AUAUACA----UAUAUAUUAACACCACAUGGCAGCCACAAA-AAUAAACUCAACUGCUGCUGUCGAGUGGAAAAUGCAAUG----UUCU ----.((((((.((((..-----...))))----.)))))).....((((.(((((((..((..-............))..))))))).))))...........----.... ( -20.94) >DroEre_CAF1 32810 98 + 1 AGUGUAUAUAGUUGUAGA-----GUAUGCA----UAUGUAUUAACACCACAUGGCAGCCACAAA-AAUAAACUCAACUGCUGCUGUCGAGUGGAAAAUGCAAUG----UUCC .((((((((.........-----)))))))----).((((((....((((.(((((((..((..-............))..))))))).))))..))))))...----.... ( -23.94) >DroMoj_CAF1 58069 101 + 1 -----------ACAUCCACACACACAAACGCACUAGUACAUCAACACCACAUGUCAGCCACAAAAAAUAGCCCCAACUGCAGCUGUUGAGUGGCAUUCACUAAGCGGCUUCC -----------.................(((..((((((((.........))))..(((((....((((((..(....)..))))))..)))))....)))).)))...... ( -19.30) >consensus ____UAUAUAUUUGUAGA_____AUAUACA____UAUAUAUUAACACCACAUGGCAGCCACAAA_AAUAAACUCAACUGCUGCUGUCGAGUGGAAAAUGCAAUG____UUCU ..............................................((((.(((((((..((...............))..))))))).))))................... (-14.94 = -14.86 + -0.08)
Location | 6,604,325 – 6,604,419 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 77.77 |
Mean single sequence MFE | -24.12 |
Consensus MFE | -13.10 |
Energy contribution | -12.42 |
Covariance contribution | -0.68 |
Combinations/Pair | 1.28 |
Mean z-score | -1.86 |
Structure conservation index | 0.54 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.669931 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6604325 94 - 22407834 AGAA----CAUUGCAUUUUCCACUCGACAGCAGCAGUUGAGUUUAUU-UUUGUGGCUGCCAUGUGGUGUUAAUAUAUA----UGUAUAU-----UCUACAAAUAUAUA---- ..((----(((..(.......(((((((.......))))))).....-...((((...)))))..))))).((((((.----((((...-----..)))).)))))).---- ( -21.80) >DroSec_CAF1 31634 94 - 1 AGAA----CAUUGCAUUUUCCACUCGGCAGCAGCAGUUGAGUUUAUU-UUUGUGGCUGCCAUGUGGUGUUAAUAUAUA----UGUAUAU-----UCUACAAAUAUAUA---- ..((----(((..(((.........((((((.((((...........-.)))).)))))))))..))))).((((((.----((((...-----..)))).)))))).---- ( -26.80) >DroSim_CAF1 32840 94 - 1 AGAA----CAUUGCAUUUUCCACUCGACAGCAGCAGUUGAGUUUAUU-UUUGUGGCUGCCAUGUGGUGUUAAUAUAUA----UGUAUAU-----UCUACAAAUAUAUA---- ..((----(((..(.......(((((((.......))))))).....-...((((...)))))..))))).((((((.----((((...-----..)))).)))))).---- ( -21.80) >DroEre_CAF1 32810 98 - 1 GGAA----CAUUGCAUUUUCCACUCGACAGCAGCAGUUGAGUUUAUU-UUUGUGGCUGCCAUGUGGUGUUAAUACAUA----UGCAUAC-----UCUACAACUAUAUACACU ((((----.........))))(((((((.......))))))).(((.-.((((((.(((.(((((.........))))----))))...-----.))))))..)))...... ( -20.00) >DroMoj_CAF1 58069 101 - 1 GGAAGCCGCUUAGUGAAUGCCACUCAACAGCUGCAGUUGGGGCUAUUUUUUGUGGCUGACAUGUGGUGUUGAUGUACUAGUGCGUUUGUGUGUGUGGAUGU----------- .....((((...(..((((((((((((((.(..(((((..((((((.....))))))))).))..))))))).))....).)))))..)....))))....----------- ( -30.20) >consensus AGAA____CAUUGCAUUUUCCACUCGACAGCAGCAGUUGAGUUUAUU_UUUGUGGCUGCCAUGUGGUGUUAAUAUAUA____UGUAUAU_____UCUACAAAUAUAUA____ (((........((((....((((....((((..(((.............)))..))))....))))................))))........)))............... (-13.10 = -12.42 + -0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:32 2006