Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,602,264 – 6,602,364 |
Length | 100 |
Max. P | 0.983891 |
Location | 6,602,264 – 6,602,364 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 80.45 |
Mean single sequence MFE | -21.45 |
Consensus MFE | -9.38 |
Energy contribution | -9.30 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.27 |
Mean z-score | -3.05 |
Structure conservation index | 0.44 |
SVM decision value | 1.96 |
SVM RNA-class probability | 0.983891 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6602264 100 - 22407834 AAUAAAAAAUACGACCAAAAAAGCUAAAUCGUAAAAGCGGUCAUAUUUCCCUUAUUUCAUCGCUUACAACUGAGUAAGCCUGUAAAAAUUAGGCUUACUU .........(((((..............))))).(((((((.(((.......)))...)))))))......(((((((((((.......))))))))))) ( -22.44) >DroSec_CAF1 29626 87 - 1 AAUAAAAAAUACGGCCCAAGAGGCUUAAUCGGAAAAACGGUCAUAUUUCCCUUAUUUCAUCGCUUACAACUGAGUAAGCACGUAAAA------------- .........(((((((.....)))......((((.((.((........)).)).))))...((((((......)))))).))))...------------- ( -17.60) >DroSim_CAF1 30768 87 - 1 AAUAAAAAAUACGGCCCAAGAAGCUUAAUCGGAAAAACGGUCAUAUUUCCCUCAUUUCAUCGCUUACAACUGAGUAAGCACGUAAAA------------- .........((((......((((..(.((((......)))).)..))))............((((((......)))))).))))...------------- ( -15.80) >DroEre_CAF1 30753 100 - 1 AAGAAAAAGUACAGCCUAAGAAGUUAAAUCGGAAAAGCCGUCAUAUUUCCCUUAUUUAAUCGCUUACAACUGAGUGAGCCUGUAAGAAUUAGGCUUACUC .......((((.((((((((((((.....(((.....)))....))))).(((((....(((((((....)))))))....)))))..))))))))))). ( -27.70) >DroYak_CAF1 31269 100 - 1 AAUAAAAAAGAGGUCCAAAAAAGCUCAAUCGGAAAAGCGUUCAUAUUUUCCUUAUUUAAUCGCUUACAACUGAGUAAGCCUGUAAAAAUUGGACUUACUU .......(((((((((((............((((((.........))))))...((((...((((((......))))))...))))..)))))))).))) ( -23.70) >consensus AAUAAAAAAUACGGCCAAAGAAGCUAAAUCGGAAAAGCGGUCAUAUUUCCCUUAUUUCAUCGCUUACAACUGAGUAAGCCUGUAAAAAUU_G_CUUACU_ .........((((.................(((((..........)))))...........((((((......)))))).))))................ ( -9.38 = -9.30 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:30 2006