Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,599,318 – 6,599,426 |
Length | 108 |
Max. P | 0.958872 |
Location | 6,599,318 – 6,599,426 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.16 |
Mean single sequence MFE | -26.92 |
Consensus MFE | -21.81 |
Energy contribution | -21.81 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.07 |
Mean z-score | -2.09 |
Structure conservation index | 0.81 |
SVM decision value | 1.49 |
SVM RNA-class probability | 0.958872 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6599318 108 + 22407834 AAACCGGAAACGGAAACGGGGAUGACUGCAUUCGUUAUUUAAAUCUACCUGGAGGCCAAA------------GCCAAAUCCAAAGUUCAAAUGCAAGUAAAAGCCCUAAACGGAUAACUG ...(((....)))....((((...((((((((.(..((((.........(((((((....------------)))...)))))))).).))))).))).....))))............. ( -24.80) >DroSec_CAF1 26630 107 + 1 AAACCGGAAACGGAAACGGGGAUGACUGCAUUCGUUAUUUAAAUCUACCUGGAGGCCA-A------------GCCAAAUCCAAAGUUCAAAUGCAAGUAAAAGCCCUAAACGGAUAACUG ...(((....)))....((((...((((((((.(..((((.........(((((((..-.------------)))...)))))))).).))))).))).....))))............. ( -23.70) >DroSim_CAF1 27834 108 + 1 AAACCGGAAACGGAAACGGGGAUGACUGCAUUCGUUAUUUAAAUCCACCUGGAGGCCAAA------------GCCAAAUCCAAAGUUCAAAUGCAAGUAAAAGCCCUAAACGGAUAACUG ...(((....)))....((((...((((((((.(..((((...(((....)))(((....------------))).......)))).).))))).))).....))))............. ( -26.80) >DroEre_CAF1 27584 117 + 1 -AACCGG--ACGGAAACGGGGAUGACUGCAUUCGUUAUUUAAAUCCACCUGGAGGCCAAAGCCAAAUCCAAAUCCAAAUCCAAAGUUCAAAUGCAAGUAAAGGCCCUAACCGGAUAACUG -..((((--.((....))(((...((((((((.(..((((...(((....)))(((....)))...................)))).).))))).))).....)))...))))....... ( -29.90) >DroYak_CAF1 28131 118 + 1 AAACCGG--ACGGAAACGGGAAUGACUGCAUUUGUUAUUUAAAUCUACCUAGAGGCCAAAGUCAAAGCCAAAGCCAAAUCCAAAGUUCAAAUGCAAGUAAAAGCCCUAACCGGAUAACUG ...((((--..(....)(((....((((((((((..((((...(((....)))(((....((....))....))).......)))).))))))).))).....)))...))))....... ( -29.40) >consensus AAACCGGAAACGGAAACGGGGAUGACUGCAUUCGUUAUUUAAAUCUACCUGGAGGCCAAA____________GCCAAAUCCAAAGUUCAAAUGCAAGUAAAAGCCCUAAACGGAUAACUG ...(((....((....))(((...((((((((.(..((((...(((....)))(((................))).......)))).).))))).))).....)))....)))....... (-21.81 = -21.81 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:29 2006