Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,584,348 – 6,584,439 |
Length | 91 |
Max. P | 0.520262 |
Location | 6,584,348 – 6,584,439 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 79.28 |
Mean single sequence MFE | -26.77 |
Consensus MFE | -17.97 |
Energy contribution | -17.30 |
Covariance contribution | -0.67 |
Combinations/Pair | 1.24 |
Mean z-score | -1.18 |
Structure conservation index | 0.67 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.520262 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6584348 91 - 22407834 ------GGAACCACGUGACAGAUAUAGCAAAUGCUAUGCCGUUAUGGCCUUGAGCUAAACUGCUGUUGACAACAGCGACAAACGCGAUGGAGGGCGG ------....((.((((((.(.((((((....))))))).))))))(((((..((.....((((((.....))))))......)).....))))))) ( -27.00) >DroPse_CAF1 12298 97 - 1 ACACACACACACACGUGACAGUUAUAGCAAAUGCUGUGCCGUUAUGGCCUUGAGCUAAACUGCUGUUGACAACGGCACCCAAUGCUAGAUAAAGUGG .(((.(((......))).......(((((..((..((((((((.((((.....))))(((....)))...)))))))).)).)))))......))). ( -25.80) >DroGri_CAF1 16331 86 - 1 ------GGAUGCGCGUGGCAGUUAUAGCGAACGCUAUGCCAUUAUGGCCUUGAGCUAAACUGUUGUUGACAACGGCAACCGUUG-----CAGGUAGG ------.((((.(((((((.(((......))))))))))))))...((((...((..(((.(((((((....))))))).))))-----)))))... ( -26.90) >DroSim_CAF1 12347 91 - 1 ------GGAACCACGUGACAGAUAUAGCAAAUGCUAUGCCGUUAUGGCCUUGAGCUAAACUGCUGUUGACAACAGCGCCAUACGCGAUGGUAAGAGG ------...((((((((...(.((((((....)))))).)..((((((....(((......)))((((....)))))))))))))).))))...... ( -28.70) >DroEre_CAF1 11841 91 - 1 ------GGAACCACGUGACAGAUAUAGCAAAUGCCAUGCCGUUAUGGCCUUGGGCUAAACUGCUGUUGACAACAGCGCCAAACGCGAUGGAGGGAGG ------....(((((((.......((((.((.((((((....)))))).))..))))....(((((.....)))))......)))).)))....... ( -26.40) >DroPer_CAF1 12322 97 - 1 ACACACACACACACGUGACAGUUAUAGCAAAUGCUGUGCCGUUAUGGCCUUGAGCUAAACUGCUGUUGACAACGGCACCCAAUGCUAGAUAAAGUGG .(((.(((......))).......(((((..((..((((((((.((((.....))))(((....)))...)))))))).)).)))))......))). ( -25.80) >consensus ______GGAACCACGUGACAGAUAUAGCAAAUGCUAUGCCGUUAUGGCCUUGAGCUAAACUGCUGUUGACAACAGCACCAAACGCGAUGGAAAGAGG .............((((((.(.((((((....))))))).))))))((.....)).....((((((.....)))))).................... (-17.97 = -17.30 + -0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:26 2006