Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,582,937 – 6,583,041 |
Length | 104 |
Max. P | 0.802695 |
Location | 6,582,937 – 6,583,041 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 87.07 |
Mean single sequence MFE | -41.30 |
Consensus MFE | -28.86 |
Energy contribution | -29.30 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.10 |
Mean z-score | -2.10 |
Structure conservation index | 0.70 |
SVM decision value | 0.62 |
SVM RNA-class probability | 0.802695 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6582937 104 - 22407834 GCCAUUCGCAUUAUCUCUGCCCCCUGGCCAGCUUGGGGAA---AGCGCAAGUGAAAGUGGGCGGCG-------AAAGCAGGUGGGGGCGGGGCACAGAGAGAUAUGGAGAGGAU .((.(((.(((.((((((((((((..(((.((((......---.((....))..)))).))).((.-------...))....))))))(.....)..)))))))))))).)).. ( -42.00) >DroSec_CAF1 10424 110 - 1 GCCAUUCGCAUUAUCUCUGCCCCCUGGCCAGCUUGGGGAA---AGCGCAAGUGAAAGUGGGCGGCGAAAGGCGAAAGCAGGUGG-GGCGGGGCACAGAGAGAUAGGAAGAGGAU .((..((...(((((((((((((((.(((.(((((.(...---..).)))))....((...((.(....).))...)).))).)-)..)))))....))))))))...)))).. ( -40.80) >DroSim_CAF1 11002 110 - 1 GCCAUUCGCAUUAUCUCUGCCCCCUGGCCAGCUUGGGGAA---AGCGCAAGUGAAAGUGGGCGGCGAAAGGCGAAAGCAGGUGG-GGCGGGGCACAGAGAGAUAGGAAGAGGAU .((..((...(((((((((((((((.(((.(((((.(...---..).)))))....((...((.(....).))...)).))).)-)..)))))....))))))))...)))).. ( -40.80) >DroYak_CAF1 10487 104 - 1 GCCAUUCGCAUUAUCUCUGCCCCCUGGACGGCUUGGGGAAAGUGGCGCAAGUGAAAGUGGGCGGUG-------AACGCAGGUGG-GGCGCGGC--AGGGAGAUGGAGAGUGGGU .((((((.((((.(((((((((((..(.....)..)))......((((............(((...-------..)))......-.)))))))--)))))))))..)))))).. ( -41.61) >consensus GCCAUUCGCAUUAUCUCUGCCCCCUGGCCAGCUUGGGGAA___AGCGCAAGUGAAAGUGGGCGGCG_______AAAGCAGGUGG_GGCGGGGCACAGAGAGAUAGGAAGAGGAU .((..((...((((((((((((((((.((((((((.(........).))))).....))).)))............((........)))))))....))))))))...)))).. (-28.86 = -29.30 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:25 2006