Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,569,667 – 6,569,778 |
Length | 111 |
Max. P | 0.638514 |
Location | 6,569,667 – 6,569,778 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 84.21 |
Mean single sequence MFE | -39.40 |
Consensus MFE | -23.42 |
Energy contribution | -26.06 |
Covariance contribution | 2.64 |
Combinations/Pair | 1.04 |
Mean z-score | -2.07 |
Structure conservation index | 0.59 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.562997 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6569667 111 + 22407834 CGACCUUUCGGUCUAAAAAUAAGCGCCUUUGCACCGACACACAGACAGGCCGCUCCACGUGCCACGCCCCACGCCCCACUGGCCAGGUGGGCGGCGUGGAAAUGUGUGUGC .((((....)))).........(((....)))....(((((((..((.(((((.((((.(((((.((.....)).....))).)).))))))))).))....))))))).. ( -43.30) >DroSec_CAF1 41758 96 + 1 CGACCUUUCGGUCUAAAAAUAAGCGCCUU--------CACACAGACAGGCCGCUCCACGUGCCACG-------CCCCACUGGCCAGGUGGGCGGCGUGGACAGGUGUGUGC .((((....))))........((((((((--------(.....)).))).)))).(((.(((((((-------(((((((.....)))))..))))))).)).)))..... ( -40.10) >DroSim_CAF1 43739 96 + 1 CGACCUUUCGGUCUAAAAAUAAGCGCCUU--------CACACAGACAGGCCGCUCCACGUGCCACG-------CCCCACUGGCCAGGUGGGCGGCGUGGACAGGUGUGUGC .((((....))))........((((((((--------(.....)).))).)))).(((.(((((((-------(((((((.....)))))..))))))).)).)))..... ( -40.10) >DroEre_CAF1 42606 89 + 1 CGACCUUUCGGUCUAAAAAUAAGCGCCUU--------CACACAGACACA--GCUCC-CCUGCCACG-------C-CCACUGGCCAGGGGGGCGGCG---GCAGCUGUGUGC .((((....))))................--------(((((((.(.(.--(((((-(((((((..-------.-....))).))))))))).).)---....))))))). ( -37.80) >DroYak_CAF1 43047 89 + 1 CGACCUUUCGGUCUAAAAAUAAGCGCCUU--------CACACAGACACA--CGUCU-CCUGCCACG-------C-CCACUGGCCAGGUGGGCGGCA---GCAGCUGUGUGC .((((....))))................--------........((((--((.((-.(((((..(-------(-(((((.....)))))))))))---).)).)))))). ( -35.70) >consensus CGACCUUUCGGUCUAAAAAUAAGCGCCUU________CACACAGACAGGCCGCUCCACGUGCCACG_______CCCCACUGGCCAGGUGGGCGGCGUGGACAGGUGUGUGC .((((....))))........................((((((..((.(((((.((((.(((((...............))).)).))))))))).))......)))))). (-23.42 = -26.06 + 2.64)
Location | 6,569,667 – 6,569,778 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 84.21 |
Mean single sequence MFE | -44.78 |
Consensus MFE | -26.20 |
Energy contribution | -27.76 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.04 |
Mean z-score | -2.25 |
Structure conservation index | 0.59 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.638514 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6569667 111 - 22407834 GCACACACAUUUCCACGCCGCCCACCUGGCCAGUGGGGCGUGGGGCGUGGCACGUGGAGCGGCCUGUCUGUGUGUCGGUGCAAAGGCGCUUAUUUUUAGACCGAAAGGUCG (.(((((((...(((((((..((((.......)))))))))))((((.(((.((.....)))))))))))))))))(((((....)))))........((((....)))). ( -51.40) >DroSec_CAF1 41758 96 - 1 GCACACACCUGUCCACGCCGCCCACCUGGCCAGUGGGG-------CGUGGCACGUGGAGCGGCCUGUCUGUGUG--------AAGGCGCUUAUUUUUAGACCGAAAGGUCG .....(((.((.(((((((..((((.......))))))-------))))))).)))(((((.(((.((.....)--------))))))))).......((((....)))). ( -43.40) >DroSim_CAF1 43739 96 - 1 GCACACACCUGUCCACGCCGCCCACCUGGCCAGUGGGG-------CGUGGCACGUGGAGCGGCCUGUCUGUGUG--------AAGGCGCUUAUUUUUAGACCGAAAGGUCG .....(((.((.(((((((..((((.......))))))-------))))))).)))(((((.(((.((.....)--------))))))))).......((((....)))). ( -43.40) >DroEre_CAF1 42606 89 - 1 GCACACAGCUGC---CGCCGCCCCCCUGGCCAGUGG-G-------CGUGGCAGG-GGAGC--UGUGUCUGUGUG--------AAGGCGCUUAUUUUUAGACCGAAAGGUCG ..((((((((.(---(((((((((.((....)).))-)-------.)))))..)-).)))--)))))..((((.--------...)))).........((((....)))). ( -43.20) >DroYak_CAF1 43047 89 - 1 GCACACAGCUGC---UGCCGCCCACCUGGCCAGUGG-G-------CGUGGCAGG-AGACG--UGUGUCUGUGUG--------AAGGCGCUUAUUUUUAGACCGAAAGGUCG ((((((..((.(---((((((((((.......))))-)-------)..))))).-))..)--)))))..((((.--------...)))).........((((....)))). ( -42.50) >consensus GCACACACCUGUCCACGCCGCCCACCUGGCCAGUGGGG_______CGUGGCACGUGGAGCGGCCUGUCUGUGUG________AAGGCGCUUAUUUUUAGACCGAAAGGUCG .((((((.........(((((((((...((((.((..........))))))..)))).))))).....))))))........................((((....)))). (-26.20 = -27.76 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:22 2006