Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 711,486 – 711,581 |
Length | 95 |
Max. P | 0.934597 |
Location | 711,486 – 711,581 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 78.97 |
Mean single sequence MFE | -20.70 |
Consensus MFE | -12.44 |
Energy contribution | -12.11 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.27 |
Mean z-score | -2.35 |
Structure conservation index | 0.60 |
SVM decision value | 1.24 |
SVM RNA-class probability | 0.934597 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 711486 95 - 22407834 UAAAACGCGUUAAACAAUGGCCAAA-CACACUC-UUGGCCAUGACAAUCAUUGCUAAAUGCUUUUGGCUAC--CCAAACAAAACCUGGAAGCUGAGUCA ................((((((((.-.......-))))))))(((.......((.....))..(..(((..--(((.........))).)))..)))). ( -22.20) >DroVir_CAF1 122431 94 - 1 UAAAACGGGCCAAACAAUGGCCAAAAAGCACACACAGACCAUGGCAAUAAUUGCUAAAUGCUUUUGGCUACUCCCGAAAAAUGACUAAAACCAA----- .....((((........(((((((((.((((.....)....(((((.....)))))..))))))))))))..))))..................----- ( -19.90) >DroPse_CAF1 114471 91 - 1 UAAAACGCGCCAAACAAUGGCCAAA-AAUACAC-UCGGCCAUGACAAUUAUUGCUAAAUGCUUUCGGCUAC--CCAGA----ACCCAAGACACGGGUCG ........(((.....((((((...-.......-..))))))..........((.....))....)))...--...((----.(((.......))))). ( -20.00) >DroEre_CAF1 100006 94 - 1 UAAAACGCGCCAAACAAUGGCUAAA-AACACU--UUGGCCAUGACAAUCAUUGCUAAAUGCUUUCGGCUAC--CCAAACAGAACCUGUAAGCUGAAUCA ......((((((.....))))....-.....(--(((((.(((.....))).)))))).)).(((((((..--....((((...)))).)))))))... ( -21.30) >DroYak_CAF1 95922 94 - 1 UAAAACGCGCCAAACAAUGGCUAAA--ACACUC-UUGGCCAUGACAAUCAUUGCUAAAUGCUUUUGGCUAC--CCAAACAGAACCUGGAAGCUGAUUCA ......((((((((..((((((((.--......-))))))))..........((.....)).))))))...--(((.........)))..))....... ( -20.80) >DroPer_CAF1 116448 91 - 1 UAAAACGCGCCAAACAAUGGCCAAA-AAUACAC-UCGGCCAUGACAAUUAUUGCUAAAUGCUUUCGGCUAC--CCAGA----ACCCAAGACACGGGUCG ........(((.....((((((...-.......-..))))))..........((.....))....)))...--...((----.(((.......))))). ( -20.00) >consensus UAAAACGCGCCAAACAAUGGCCAAA_AACACAC_UUGGCCAUGACAAUCAUUGCUAAAUGCUUUCGGCUAC__CCAAACA_AACCUAAAACCUGAGUCA ........(((.....((((((..............))))))..........((.....))....)))............................... (-12.44 = -12.11 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:58 2006