Locus 2409

Sequence ID 2L_DroMel_CAF1
Location 6,567,840 – 6,567,949
Length 109
Max. P 0.500000
window3877

overview

Window 7

Location 6,567,840 – 6,567,949
Length 109
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 83.11
Mean single sequence MFE -28.53
Consensus MFE -22.43
Energy contribution -22.18
Covariance contribution -0.25
Combinations/Pair 1.14
Mean z-score -1.34
Structure conservation index 0.79
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6567840 109 + 22407834
CACUUGGCCCGCGUCCAUUGGCCCCUAAAAACUGAUGGCCAUUGCAUGCCAGUCGAACAUUUUGUGGCCAUUUGCGUGCCGCCUUUUUAGUCCUUUCAGUCCUUUUAGU
...(((((..((((.((.(((((.(........)..))))).)).))))..))))).......((((((......).)))))........................... ( -25.00)
>DroSec_CAF1 39963 108 + 1
CACUUGGCCCGCGUCCAUUGGCCCC-AAAAGCUGAUGGCCAUUGCAUGCCAGUCGAACAUUUUGUGGCCAUUUGCGUGCCGCCUUUUUGGUCCUUUCAGUCCUUUUAGU
.....(((.((((.....(((((.(-((((..(((((((........)))).)))....))))).)))))..)))).)))(((.....))).................. ( -31.70)
>DroSim_CAF1 41971 105 + 1
CACUUGGCCCGCGUCCAUUGGCCCC-AAAAGCUGAUGGCCAUUGCAUGCCAGUCGAACAUUUUGUGGCCAUUUGCGUGCCGCCUUUUUAGUCCUUUCAGUCCUUUU---
.....(((.((((.....(((((.(-((((..(((((((........)))).)))....))))).)))))..)))).)))..........................--- ( -29.60)
>DroEre_CAF1 40859 97 + 1
CACUUGGCCCGCGUCCAUUGGCCCC-A-AAGCUGAUGGCCAUUGCAUGCCAGUCCAACAUUUUGUGGCCAUUUGCGUGCCGCCUUUU----------AGCCCUUUUAGC
.....(((.((((.....(((((.(-(-(((.((.(((..((((.....))))))).))))))).)))))..)))).)))((.....----------.))......... ( -27.50)
>DroYak_CAF1 41299 88 + 1
CACUUGGCCCGCGUCCAUUGGCCCC-A-AAACUGAUGGCCAUUGCAUGCCAGUCGAACAUUUUGUGGCCAUUUGCGUGCCGCCUUUU----------AG---------C
.....(((.((((.....(((((.(-(-(((.(((((((........)))).)))....))))).)))))..)))).))).......----------..---------. ( -28.20)
>DroAna_CAF1 42676 87 + 1
CUCCUGGUCCCUGUCCAUUGGCCCC-UA--ACCGAUGGUCAUUGCAUGCCAGGCGCACAUUUUGUGGCCAUUUGCGUGCCGCCUUUU----------AG---------U
.....(((...((.(((((((....-..--.))))))).))..((((((..(((.(((.....))))))....)))))).)))....----------..---------. ( -29.20)
>consensus
CACUUGGCCCGCGUCCAUUGGCCCC_AAAAACUGAUGGCCAUUGCAUGCCAGUCGAACAUUUUGUGGCCAUUUGCGUGCCGCCUUUU__________AGUCCUUUU__U
.....(((.((((((....)))...........(((((((((...(((.........)))...))))))))).))).)))............................. (-22.43 = -22.18 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:20 2006