Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,559,015 – 6,559,106 |
Length | 91 |
Max. P | 0.999775 |
Location | 6,559,015 – 6,559,106 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 98.24 |
Mean single sequence MFE | -13.68 |
Consensus MFE | -13.84 |
Energy contribution | -13.68 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.05 |
Mean z-score | -1.58 |
Structure conservation index | 1.01 |
SVM decision value | 1.80 |
SVM RNA-class probability | 0.977991 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6559015 91 + 22407834 UUCAAGCUGGUGGAGAAGGCAGCUGUUUAAAGUUAUUAUUAAUUAAUUCAAUAAACCAAUUAAUAACAAAAACACAACAACUACUAAGCUA ....(((((((((.......((((......)))).(((((((((.............)))))))))..............))))).)))). ( -13.62) >DroSec_CAF1 30982 91 + 1 UUCAAGCUGGUGGAGAAGGCAGCUGUUUAAAGUUAUUAUUAAUUAAUUCAAUAAACCAAUUAAUAACAAAAACACAACAACUACUAAGCUA ....(((((((((.......((((......)))).(((((((((.............)))))))))..............))))).)))). ( -13.62) >DroSim_CAF1 32956 91 + 1 UUCAAGCUAGUGGAGAAGGCAGCUGUUUAAAGUUAUUAUUAAUUAAUUCAAUAAACCAAUUAAUAACAAAAACACAACAACUACUAAGCUA ....(((((((((.......((((......)))).(((((((((.............)))))))))..............))))).)))). ( -13.92) >DroEre_CAF1 31732 88 + 1 UUCAAGCUGGUGGAGAAGGCAGCUGUUUAAAGUUAUUAUUAAUUAAUUCAAUAAACCAAUUAAUAACAAAAACACA---ACUACUAAGCUA ....(((((((((.......((((......)))).(((((((((.............)))))))))..........---.))))).)))). ( -13.62) >DroYak_CAF1 32355 91 + 1 UUCAAGCUGGUGGAGAAGGCAGCUGUUUAAAGUUAUUAUUAAUUAAUUCAAUAAACCAAUUAAUAACAAAAACACAACAACUACUAAGCUA ....(((((((((.......((((......)))).(((((((((.............)))))))))..............))))).)))). ( -13.62) >consensus UUCAAGCUGGUGGAGAAGGCAGCUGUUUAAAGUUAUUAUUAAUUAAUUCAAUAAACCAAUUAAUAACAAAAACACAACAACUACUAAGCUA ....(((((((((.......((((......)))).(((((((((.............)))))))))..............))))).)))). (-13.84 = -13.68 + -0.16)
Location | 6,559,015 – 6,559,106 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 98.24 |
Mean single sequence MFE | -21.98 |
Consensus MFE | -20.48 |
Energy contribution | -21.08 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -3.32 |
Structure conservation index | 0.93 |
SVM decision value | 4.05 |
SVM RNA-class probability | 0.999775 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6559015 91 - 22407834 UAGCUUAGUAGUUGUUGUGUUUUUGUUAUUAAUUGGUUUAUUGAAUUAAUUAAUAAUAACUUUAAACAGCUGCCUUCUCCACCAGCUUGAA .......(((((((((......(((((((((((((((((...))))))))))))))))).....))))))))).................. ( -22.10) >DroSec_CAF1 30982 91 - 1 UAGCUUAGUAGUUGUUGUGUUUUUGUUAUUAAUUGGUUUAUUGAAUUAAUUAAUAAUAACUUUAAACAGCUGCCUUCUCCACCAGCUUGAA .......(((((((((......(((((((((((((((((...))))))))))))))))).....))))))))).................. ( -22.10) >DroSim_CAF1 32956 91 - 1 UAGCUUAGUAGUUGUUGUGUUUUUGUUAUUAAUUGGUUUAUUGAAUUAAUUAAUAAUAACUUUAAACAGCUGCCUUCUCCACUAGCUUGAA .((((..(((((((((......(((((((((((((((((...))))))))))))))))).....)))))))))..........)))).... ( -22.80) >DroEre_CAF1 31732 88 - 1 UAGCUUAGUAGU---UGUGUUUUUGUUAUUAAUUGGUUUAUUGAAUUAAUUAAUAAUAACUUUAAACAGCUGCCUUCUCCACCAGCUUGAA .......(((((---(((....(((((((((((((((((...)))))))))))))))))......)))))))).................. ( -20.80) >DroYak_CAF1 32355 91 - 1 UAGCUUAGUAGUUGUUGUGUUUUUGUUAUUAAUUGGUUUAUUGAAUUAAUUAAUAAUAACUUUAAACAGCUGCCUUCUCCACCAGCUUGAA .......(((((((((......(((((((((((((((((...))))))))))))))))).....))))))))).................. ( -22.10) >consensus UAGCUUAGUAGUUGUUGUGUUUUUGUUAUUAAUUGGUUUAUUGAAUUAAUUAAUAAUAACUUUAAACAGCUGCCUUCUCCACCAGCUUGAA .((((..(((((((((......(((((((((((((((((...))))))))))))))))).....)))))))))..........)))).... (-20.48 = -21.08 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:16 2006